Corynebacterium marinum DSM 44953

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium marinum

Average proteome isoelectric point is 5.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2547 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B6TQJ8|A0A0B6TQJ8_9CORY Uncharacterized protein OS=Corynebacterium marinum DSM 44953 OX=1224162 GN=B840_04600 PE=4 SV=1
MM1 pKa = 7.42KK2 pKa = 9.59RR3 pKa = 11.84TIALAALALTSSLALAACTDD23 pKa = 4.12DD24 pKa = 3.91TASDD28 pKa = 3.8APEE31 pKa = 4.16TTTTTTSEE39 pKa = 4.13TATQSSEE46 pKa = 3.85EE47 pKa = 4.1TGMNDD52 pKa = 2.87QMGAEE57 pKa = 4.39GHH59 pKa = 6.37DD60 pKa = 3.65HH61 pKa = 6.84PADD64 pKa = 4.23GGQPPAGIAAEE75 pKa = 4.23EE76 pKa = 4.32NPTYY80 pKa = 10.41PVDD83 pKa = 3.76TEE85 pKa = 4.44VVLTADD91 pKa = 4.25HH92 pKa = 6.13MPGMEE97 pKa = 4.12GAEE100 pKa = 3.97ATIAGAFDD108 pKa = 3.33TTTYY112 pKa = 10.32SVSYY116 pKa = 9.57TPTDD120 pKa = 3.32GGDD123 pKa = 3.15PVTDD127 pKa = 3.61HH128 pKa = 6.6RR129 pKa = 11.84WVVHH133 pKa = 6.18EE134 pKa = 4.48EE135 pKa = 3.95LVDD138 pKa = 4.02PGQAPLPEE146 pKa = 5.0GSEE149 pKa = 4.15VVLDD153 pKa = 3.97AEE155 pKa = 5.02HH156 pKa = 6.2MSGMKK161 pKa = 10.16GVEE164 pKa = 3.67ATIDD168 pKa = 3.56YY169 pKa = 8.7STDD172 pKa = 2.91EE173 pKa = 4.18TVYY176 pKa = 10.42MVDD179 pKa = 3.47LTVDD183 pKa = 3.48GMTMTNHH190 pKa = 5.38KK191 pKa = 9.32WVTEE195 pKa = 4.08SEE197 pKa = 4.25IAPAEE202 pKa = 3.99

Molecular weight: 21.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B6TT99|A0A0B6TT99_9CORY Cytidylate kinase OS=Corynebacterium marinum DSM 44953 OX=1224162 GN=cmk PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.63KK15 pKa = 9.39KK16 pKa = 9.04HH17 pKa = 5.39RR18 pKa = 11.84KK19 pKa = 5.37MLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2547

0

2547

816021

29

3036

320.4

34.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.143 ± 0.069

0.601 ± 0.012

6.149 ± 0.041

6.266 ± 0.05

3.181 ± 0.027

8.926 ± 0.037

2.223 ± 0.028

4.592 ± 0.038

2.402 ± 0.036

10.128 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.157 ± 0.023

2.38 ± 0.03

5.349 ± 0.04

2.96 ± 0.027

6.972 ± 0.057

5.372 ± 0.029

6.067 ± 0.033

8.622 ± 0.046

1.452 ± 0.022

2.058 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski