Corchorus golden mosaic virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 8.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A5H144|A5H144_9GEMI AC4 protein OS=Corchorus golden mosaic virus OX=390436 GN=AC4 PE=3 SV=1
MM1 pKa = 7.56SGRR4 pKa = 11.84FKK6 pKa = 10.91KK7 pKa = 10.43QGVSFFLTWPKK18 pKa = 10.76CPVTKK23 pKa = 10.45EE24 pKa = 3.98SALDD28 pKa = 3.55QIQALTLPTNIVYY41 pKa = 10.07IRR43 pKa = 11.84VCEE46 pKa = 4.17EE47 pKa = 3.49KK48 pKa = 10.64HH49 pKa = 6.14QDD51 pKa = 3.54GSPHH55 pKa = 5.97LHH57 pKa = 6.9ALVQFQKK64 pKa = 11.17KK65 pKa = 9.05FICTNCRR72 pKa = 11.84LFDD75 pKa = 4.13LSHH78 pKa = 6.67PQNSRR83 pKa = 11.84QFHH86 pKa = 5.18CHH88 pKa = 5.9IEE90 pKa = 4.25TARR93 pKa = 11.84SSSDD97 pKa = 2.64AKK99 pKa = 11.09SYY101 pKa = 10.6IEE103 pKa = 4.15KK104 pKa = 10.8DD105 pKa = 3.55GVFCEE110 pKa = 4.16WGTFQVDD117 pKa = 3.02GRR119 pKa = 11.84SARR122 pKa = 11.84GGQQTVNEE130 pKa = 4.71AYY132 pKa = 10.35AKK134 pKa = 10.48ALNSGSKK141 pKa = 10.68DD142 pKa = 3.19EE143 pKa = 4.63ALNIIKK149 pKa = 10.23EE150 pKa = 4.48LVPKK154 pKa = 10.49DD155 pKa = 3.6YY156 pKa = 11.31VLQFHH161 pKa = 6.89NLNQNLEE168 pKa = 4.45RR169 pKa = 11.84IFAPPVNVFEE179 pKa = 4.87PPFPLSSFNNVPAVINQWVNDD200 pKa = 4.13NIMDD204 pKa = 4.59AAARR208 pKa = 11.84PFRR211 pKa = 11.84PISIIIEE218 pKa = 4.42GPSRR222 pKa = 11.84TGKK225 pKa = 7.64TLWARR230 pKa = 11.84SLGRR234 pKa = 11.84HH235 pKa = 5.8NYY237 pKa = 10.07LCGHH241 pKa = 7.41LDD243 pKa = 4.18LSPKK247 pKa = 10.02VYY249 pKa = 10.89SNEE252 pKa = 3.02AWYY255 pKa = 10.82NVIDD259 pKa = 5.29DD260 pKa = 4.41VDD262 pKa = 3.64PHH264 pKa = 6.13YY265 pKa = 10.52LKK267 pKa = 10.88HH268 pKa = 5.92MKK270 pKa = 10.16EE271 pKa = 4.06FMGAQRR277 pKa = 11.84DD278 pKa = 3.71WQSNCKK284 pKa = 9.1YY285 pKa = 10.44GKK287 pKa = 9.33PIQINGGIPTIFLCNPGPTSSYY309 pKa = 10.97KK310 pKa = 10.65EE311 pKa = 3.81FFEE314 pKa = 4.36EE315 pKa = 4.53EE316 pKa = 3.9KK317 pKa = 11.18NKK319 pKa = 10.76AINDD323 pKa = 3.83WAKK326 pKa = 11.0KK327 pKa = 8.69NVIYY331 pKa = 9.24VTIEE335 pKa = 3.68EE336 pKa = 4.69PFFNTTNQEE345 pKa = 3.9STSALEE351 pKa = 4.14EE352 pKa = 4.68SNSSEE357 pKa = 4.36TNN359 pKa = 3.08

Molecular weight: 40.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A5H141|A5H141_9GEMI Replication enhancer OS=Corchorus golden mosaic virus OX=390436 GN=AC3 PE=3 SV=1
MM1 pKa = 7.19KK2 pKa = 10.37RR3 pKa = 11.84EE4 pKa = 4.22APWRR8 pKa = 11.84TNAGTSKK15 pKa = 10.08VRR17 pKa = 11.84RR18 pKa = 11.84ALNFSPRR25 pKa = 11.84SGLGPKK31 pKa = 10.13ASAWVNRR38 pKa = 11.84PMYY41 pKa = 9.63RR42 pKa = 11.84KK43 pKa = 8.55PRR45 pKa = 11.84IYY47 pKa = 9.41RR48 pKa = 11.84TYY50 pKa = 10.72RR51 pKa = 11.84SPDD54 pKa = 3.24VPKK57 pKa = 10.81GCEE60 pKa = 4.39GPCKK64 pKa = 10.23VQSFEE69 pKa = 3.82QRR71 pKa = 11.84HH72 pKa = 6.26DD73 pKa = 3.16ISHH76 pKa = 6.13VGKK79 pKa = 10.55VMCISDD85 pKa = 3.56VTRR88 pKa = 11.84GNGITHH94 pKa = 6.78RR95 pKa = 11.84VGKK98 pKa = 9.62RR99 pKa = 11.84FCIKK103 pKa = 10.12SVYY106 pKa = 10.1ILGKK110 pKa = 10.11VWMDD114 pKa = 4.51DD115 pKa = 3.58NIKK118 pKa = 10.64LKK120 pKa = 10.74NHH122 pKa = 5.99TNSVMFWLVRR132 pKa = 11.84DD133 pKa = 3.7RR134 pKa = 11.84RR135 pKa = 11.84PYY137 pKa = 8.05GTPMDD142 pKa = 4.6FGQVFNMYY150 pKa = 10.66DD151 pKa = 3.86NEE153 pKa = 4.36PSTATIKK160 pKa = 10.89NDD162 pKa = 3.0LRR164 pKa = 11.84DD165 pKa = 3.73RR166 pKa = 11.84YY167 pKa = 9.95QVLHH171 pKa = 6.65RR172 pKa = 11.84FASKK176 pKa = 9.07VTGGQYY182 pKa = 11.09ASNEE186 pKa = 3.76QSLVRR191 pKa = 11.84RR192 pKa = 11.84FWKK195 pKa = 10.44VNNHH199 pKa = 4.48VVYY202 pKa = 10.66NHH204 pKa = 5.91QEE206 pKa = 3.39AAKK209 pKa = 10.14YY210 pKa = 10.5DD211 pKa = 3.75NHH213 pKa = 6.5TEE215 pKa = 4.02NALLLYY221 pKa = 7.29MACTHH226 pKa = 7.07ASNPVYY232 pKa = 9.86ATLKK236 pKa = 9.47IRR238 pKa = 11.84IYY240 pKa = 10.59FYY242 pKa = 11.32DD243 pKa = 4.06SISNN247 pKa = 3.66

Molecular weight: 28.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1554

100

359

222.0

25.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.084 ± 0.595

2.124 ± 0.208

4.762 ± 0.274

4.44 ± 0.734

4.376 ± 0.492

4.955 ± 0.648

3.475 ± 0.377

5.92 ± 0.492

5.792 ± 0.392

7.014 ± 0.556

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.252 ± 0.415

6.306 ± 0.579

5.084 ± 0.387

3.925 ± 0.404

7.658 ± 1.066

10.039 ± 1.022

5.212 ± 0.499

6.306 ± 0.633

1.351 ± 0.247

3.925 ± 0.668
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski