Acinetobacter phage vB_AbaM_B9

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; unclassified Myoviridae

Average proteome isoelectric point is 5.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 156 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S1GTZ6|A0A2S1GTZ6_9CAUD Uncharacterized protein OS=Acinetobacter phage vB_AbaM_B9 OX=2163899 GN=AB9_142 PE=4 SV=1
MM1 pKa = 7.21SVNYY5 pKa = 10.34SSVILIGADD14 pKa = 3.39YY15 pKa = 11.22DD16 pKa = 3.99SLTWNTLTDD25 pKa = 3.61EE26 pKa = 4.57AKK28 pKa = 10.57SIIRR32 pKa = 11.84EE33 pKa = 4.06EE34 pKa = 4.18VLQDD38 pKa = 4.31SPICYY43 pKa = 9.8EE44 pKa = 3.76WDD46 pKa = 3.76DD47 pKa = 4.14EE48 pKa = 4.38NSEE51 pKa = 3.99ITNQDD56 pKa = 3.03EE57 pKa = 4.76VEE59 pKa = 4.32EE60 pKa = 4.2AWEE63 pKa = 4.09EE64 pKa = 3.77QCIYY68 pKa = 10.4EE69 pKa = 4.03WEE71 pKa = 4.13DD72 pKa = 4.83RR73 pKa = 11.84KK74 pKa = 11.24GEE76 pKa = 4.14WINDD80 pKa = 3.29YY81 pKa = 10.89FGFSGTIGNYY91 pKa = 5.6FTGVIDD97 pKa = 3.76YY98 pKa = 10.8VGVEE102 pKa = 3.91IHH104 pKa = 7.24DD105 pKa = 4.8LNADD109 pKa = 3.43HH110 pKa = 6.98QGAIDD115 pKa = 3.41EE116 pKa = 4.5WFKK119 pKa = 11.57SFTVKK124 pKa = 10.63PEE126 pKa = 3.76LHH128 pKa = 6.71HH129 pKa = 7.19GVLVWW134 pKa = 3.61

Molecular weight: 15.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S1GU89|A0A2S1GU89_9CAUD Uncharacterized protein OS=Acinetobacter phage vB_AbaM_B9 OX=2163899 GN=AB9_091 PE=4 SV=1
MM1 pKa = 7.4EE2 pKa = 5.23KK3 pKa = 10.38EE4 pKa = 4.0IVVDD8 pKa = 3.85EE9 pKa = 4.59RR10 pKa = 11.84MAFNNGRR17 pKa = 11.84NYY19 pKa = 11.35DD20 pKa = 4.53DD21 pKa = 4.62INTILISNWYY31 pKa = 7.17NSKK34 pKa = 9.69WKK36 pKa = 10.03RR37 pKa = 11.84QRR39 pKa = 11.84KK40 pKa = 8.76NNTVCFRR47 pKa = 11.84SKK49 pKa = 11.17LNWLYY54 pKa = 11.5

Molecular weight: 6.72 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

156

0

156

26605

47

863

170.5

19.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.905 ± 0.221

1.466 ± 0.125

6.721 ± 0.175

7.57 ± 0.298

4.544 ± 0.16

5.852 ± 0.236

1.797 ± 0.105

7.033 ± 0.163

8.066 ± 0.265

8.438 ± 0.201

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.214 ± 0.102

6.127 ± 0.222

2.454 ± 0.148

3.45 ± 0.132

3.714 ± 0.158

6.566 ± 0.209

5.732 ± 0.261

6.984 ± 0.179

1.376 ± 0.079

4.992 ± 0.201
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski