Ceriporiopsis subvermispora (strain B) (White-rot fungus) (Gelatoporia subvermispora)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Polyporales; Gelatoporiaceae; Gelatoporia; Gelatoporia subvermispora

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12078 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M2PRF8|M2PRF8_CERS8 Uncharacterized protein OS=Ceriporiopsis subvermispora (strain B) OX=914234 GN=CERSUDRAFT_81950 PE=3 SV=1
MM1 pKa = 7.35PAEE4 pKa = 4.21LASPQRR10 pKa = 11.84PQSLSTMARR19 pKa = 11.84SKK21 pKa = 10.66LVEE24 pKa = 4.31VGSGARR30 pKa = 11.84DD31 pKa = 3.55FSLHH35 pKa = 5.86RR36 pKa = 11.84WVLLKK41 pKa = 11.06NSFTRR46 pKa = 11.84SHH48 pKa = 7.36PLNAATVAAAAPAPAQADD66 pKa = 3.49VNYY69 pKa = 10.12VYY71 pKa = 10.93RR72 pKa = 11.84HH73 pKa = 5.11GAAPASEE80 pKa = 4.14QDD82 pKa = 4.17DD83 pKa = 3.89EE84 pKa = 5.3DD85 pKa = 5.17SFMFPDD91 pKa = 4.56PGAMHH96 pKa = 7.26GAPAGSDD103 pKa = 2.99EE104 pKa = 4.25GQWLDD109 pKa = 3.46SVLAEE114 pKa = 4.52LQDD117 pKa = 5.35DD118 pKa = 4.28GDD120 pKa = 5.07DD121 pKa = 4.44DD122 pKa = 4.4VDD124 pKa = 3.8AAASPTSAVDD134 pKa = 3.57EE135 pKa = 4.8DD136 pKa = 5.02DD137 pKa = 4.97EE138 pKa = 4.7PLSPLLSPMSSSDD151 pKa = 3.74DD152 pKa = 3.69LVSSSSFYY160 pKa = 10.72YY161 pKa = 9.62PPPIAIPYY169 pKa = 6.71PVPYY173 pKa = 10.12PPLQPTASEE182 pKa = 4.46WYY184 pKa = 9.4DD185 pKa = 3.4VARR188 pKa = 11.84SPVALLNASPFDD200 pKa = 4.09DD201 pKa = 4.25ALPYY205 pKa = 10.76YY206 pKa = 10.38YY207 pKa = 10.69ADD209 pKa = 5.2DD210 pKa = 4.61LDD212 pKa = 4.48EE213 pKa = 5.23PPVPDD218 pKa = 5.6AIEE221 pKa = 4.42DD222 pKa = 3.94TSDD225 pKa = 4.1DD226 pKa = 3.89EE227 pKa = 5.66SDD229 pKa = 3.71APSTPFYY236 pKa = 10.87RR237 pKa = 11.84STTSLDD243 pKa = 3.58PASVPLPPEE252 pKa = 3.86QHH254 pKa = 5.38PHH256 pKa = 6.32VYY258 pKa = 9.64IDD260 pKa = 3.59SDD262 pKa = 3.56DD263 pKa = 4.08SYY265 pKa = 11.56FYY267 pKa = 10.55PFEE270 pKa = 5.35LDD272 pKa = 3.53PLPSRR277 pKa = 11.84SHH279 pKa = 6.88ADD281 pKa = 3.17GAGTARR287 pKa = 11.84VFGTSLYY294 pKa = 9.89QEE296 pKa = 4.75CC297 pKa = 4.63

Molecular weight: 31.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M2QVN3|M2QVN3_CERS8 Flavodoxin-like domain-containing protein OS=Ceriporiopsis subvermispora (strain B) OX=914234 GN=CERSUDRAFT_145890 PE=4 SV=1
RR1 pKa = 7.02CTLSRR6 pKa = 11.84TTRR9 pKa = 11.84ARR11 pKa = 11.84SSARR15 pKa = 11.84SACSSTRR22 pKa = 11.84RR23 pKa = 11.84PSSAGPAPSASWWSPRR39 pKa = 11.84ARR41 pKa = 11.84RR42 pKa = 11.84SRR44 pKa = 11.84TSPSSPSRR52 pKa = 11.84ASSPSPPPRR61 pKa = 11.84RR62 pKa = 11.84SSRR65 pKa = 11.84SSS67 pKa = 2.88

Molecular weight: 7.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12077

1

12078

5150447

37

5567

426.4

47.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.234 ± 0.021

1.319 ± 0.01

5.628 ± 0.015

5.868 ± 0.022

3.569 ± 0.013

6.529 ± 0.023

2.602 ± 0.01

4.697 ± 0.017

4.045 ± 0.023

9.277 ± 0.025

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.128 ± 0.007

3.112 ± 0.012

6.58 ± 0.029

3.759 ± 0.013

6.608 ± 0.019

8.447 ± 0.029

6.0 ± 0.015

6.511 ± 0.016

1.479 ± 0.008

2.607 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski