Carboxydocella sporoproducens DSM 16521
Average proteome isoelectric point is 6.75
Get precalculated fractions of proteins
Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
All
Note: above files contain also dissociation constants (pKa)
Virtual 2D-PAGE plot for 2660 proteins (isoelectric point calculated using IPC2_protein)
Get csv file with sequences according to given criteria:
* You can choose from 21 different methods for calculating isoelectric point
Summary statistics related to proteome-wise predictions
Protein with the lowest isoelectric point:
>tr|A0A1T4RW74|A0A1T4RW74_9FIRM Serine dehydratase alpha chain OS=Carboxydocella sporoproducens DSM 16521 OX=1121270 GN=SAMN02745885_02301 PE=4 SV=1
MM1 pKa = 7.27 KK2 pKa = 10.64 VKK4 pKa = 10.33 VDD6 pKa = 3.67 PDD8 pKa = 3.63 LCISCGACVSTCPDD22 pKa = 3.01 VYY24 pKa = 11.34 DD25 pKa = 3.9 WDD27 pKa = 4.76 DD28 pKa = 3.46 EE29 pKa = 4.61 GKK31 pKa = 10.65 AKK33 pKa = 10.71 AIVDD37 pKa = 4.1 EE38 pKa = 4.69 VPDD41 pKa = 4.39 DD42 pKa = 4.55 LEE44 pKa = 6.43 DD45 pKa = 3.55 EE46 pKa = 4.22 ARR48 pKa = 11.84 EE49 pKa = 3.96 ALEE52 pKa = 4.21 NCPTDD57 pKa = 5.17 AIAEE61 pKa = 4.3 VV62 pKa = 3.49
Molecular weight: 6.72 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 3.761
IPC2_protein 3.694
IPC_protein 3.643
Toseland 3.439
ProMoST 3.834
Dawson 3.656
Bjellqvist 3.808
Wikipedia 3.605
Rodwell 3.478
Grimsley 3.35
Solomon 3.63
Lehninger 3.579
Nozaki 3.783
DTASelect 3.999
Thurlkill 3.516
EMBOSS 3.617
Sillero 3.77
Patrickios 1.85
IPC_peptide 3.617
IPC2_peptide 3.745
IPC2.peptide.svr19 3.728
Protein with the highest isoelectric point:
>tr|A0A1T4SA52|A0A1T4SA52_9FIRM 30S ribosomal protein S14 type Z OS=Carboxydocella sporoproducens DSM 16521 OX=1121270 GN=rpsZ PE=3 SV=1
MM1 pKa = 7.3 EE2 pKa = 5.66 RR3 pKa = 11.84 YY4 pKa = 8.97 AVPVHH9 pKa = 6.34 CAAALVIGRR18 pKa = 11.84 RR19 pKa = 11.84 AMGFRR24 pKa = 11.84 EE25 pKa = 4.1 RR26 pKa = 11.84 VTKK29 pKa = 10.16 EE30 pKa = 3.49 LQQLVTQIKK39 pKa = 9.99 QDD41 pKa = 3.7 LTCKK45 pKa = 10.23 VNPNIPRR52 pKa = 11.84 EE53 pKa = 4.37 GKK55 pKa = 10.14 GMTRR59 pKa = 11.84 RR60 pKa = 11.84 VRR62 pKa = 11.84 ACLRR66 pKa = 11.84 WLDD69 pKa = 4.25 GKK71 pKa = 11.05 LLLHH75 pKa = 6.64 NGFARR80 pKa = 11.84 QQQEE84 pKa = 3.48 AYY86 pKa = 9.95 YY87 pKa = 10.43 SVWHH91 pKa = 6.73 DD92 pKa = 3.86 LKK94 pKa = 11.23 KK95 pKa = 10.62 LALSLRR101 pKa = 4.04
Molecular weight: 11.75 kDa
Isoelectric point according different methods:
IPC2.protein.svr19 9.339
IPC2_protein 9.589
IPC_protein 10.101
Toseland 10.555
ProMoST 10.379
Dawson 10.657
Bjellqvist 10.335
Wikipedia 10.833
Rodwell 10.965
Grimsley 10.701
Solomon 10.745
Lehninger 10.716
Nozaki 10.555
DTASelect 10.321
Thurlkill 10.555
EMBOSS 10.935
Sillero 10.584
Patrickios 10.716
IPC_peptide 10.745
IPC2_peptide 9.399
IPC2.peptide.svr19 8.601
Peptides (in silico digests for buttom-up proteomics)
Below you can find
in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.
Try ESI
ChTry ESI
ArgC ESI
LysN ESI
TryLysC ESI
Try MALDI
ChTry MALDI
ArgC MALDI
LysN MALDI
TryLysC MALDI
Try LTQ
ChTry LTQ
ArgC LTQ
LysN LTQ
TryLysC LTQ
Try MSlow
ChTry MSlow
ArgC MSlow
LysN MSlow
TryLysC MSlow
Try MShigh
ChTry MShigh
ArgC MShigh
LysN MShigh
TryLysC MShigh
General Statistics
Number of major isoforms
Number of additional isoforms
Number of all proteins
Number of amino acids
Min. Seq. Length
Max. Seq. Length
Avg. Seq. Length
Avg. Mol. Weight
2660
0
2660
791629
12
2792
297.6
33.1
Amino acid frequency
Ala
Cys
Asp
Glu
Phe
Gly
His
Ile
Lys
Leu
9.165 ± 0.056
1.128 ± 0.023
4.27 ± 0.034
7.235 ± 0.055
3.568 ± 0.032
7.847 ± 0.045
1.801 ± 0.023
6.619 ± 0.047
5.556 ± 0.045
11.266 ± 0.071
Met
Asn
Gln
Pro
Arg
Ser
Thr
Val
Trp
Tyr
2.29 ± 0.022
3.48 ± 0.034
4.453 ± 0.033
4.441 ± 0.037
5.693 ± 0.043
4.457 ± 0.039
4.882 ± 0.041
7.324 ± 0.036
1.403 ± 0.024
3.123 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level
Most of the basic statistics you can see at this page can be downloaded from this CSV file
For dipeptide frequency statistics click here