Radi vesiculovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Vesiculovirus

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D3R1W3|A0A0D3R1W3_9RHAB Glycoprotein OS=Radi vesiculovirus OX=1972566 PE=3 SV=1
MM1 pKa = 8.08DD2 pKa = 4.74LQRR5 pKa = 11.84SAFEE9 pKa = 4.05ALRR12 pKa = 11.84NYY14 pKa = 9.87PNLEE18 pKa = 3.93NALADD23 pKa = 3.91ADD25 pKa = 4.0EE26 pKa = 4.91SEE28 pKa = 4.64SLRR31 pKa = 11.84DD32 pKa = 3.57PPSPNSSQAHH42 pKa = 4.98EE43 pKa = 4.35SEE45 pKa = 4.41GEE47 pKa = 3.99KK48 pKa = 10.52FYY50 pKa = 10.64LTDD53 pKa = 3.69QLDD56 pKa = 3.89LLEE59 pKa = 5.38SSDD62 pKa = 5.26EE63 pKa = 4.04EE64 pKa = 5.69DD65 pKa = 3.85EE66 pKa = 5.63DD67 pKa = 4.79LSTDD71 pKa = 3.11IGSSGQHH78 pKa = 5.45QDD80 pKa = 2.76TYY82 pKa = 11.9SNIDD86 pKa = 3.7DD87 pKa = 4.19RR88 pKa = 11.84SASNQDD94 pKa = 2.84EE95 pKa = 4.31DD96 pKa = 4.64SEE98 pKa = 4.67EE99 pKa = 3.77EE100 pKa = 3.94RR101 pKa = 11.84EE102 pKa = 4.25AYY104 pKa = 9.6GVHH107 pKa = 6.36FPSEE111 pKa = 4.36KK112 pKa = 9.28PTIDD116 pKa = 5.23LSDD119 pKa = 4.22LPATLQRR126 pKa = 11.84RR127 pKa = 11.84IFVDD131 pKa = 3.49ISNAFKK137 pKa = 11.27KK138 pKa = 10.28MMEE141 pKa = 4.44APSCQHH147 pKa = 5.7FPVMVRR153 pKa = 11.84GRR155 pKa = 11.84IEE157 pKa = 5.33LIPSSDD163 pKa = 3.39MAIHH167 pKa = 5.26QTPSSATTPEE177 pKa = 4.43SEE179 pKa = 5.14DD180 pKa = 3.99LPPSPVKK187 pKa = 10.12RR188 pKa = 11.84DD189 pKa = 3.33RR190 pKa = 11.84LLDD193 pKa = 3.35RR194 pKa = 11.84FKK196 pKa = 10.27IHH198 pKa = 6.7HH199 pKa = 7.21RR200 pKa = 11.84STQDD204 pKa = 3.31PLEE207 pKa = 4.23TSFVEE212 pKa = 4.13IFGSEE217 pKa = 3.94DD218 pKa = 2.96SARR221 pKa = 11.84AAWGDD226 pKa = 3.26GSLSYY231 pKa = 10.97KK232 pKa = 10.29EE233 pKa = 4.65LLILGLRR240 pKa = 11.84RR241 pKa = 11.84KK242 pKa = 10.1GVFNRR247 pKa = 11.84MRR249 pKa = 11.84IAYY252 pKa = 8.71DD253 pKa = 3.25LTPIFEE259 pKa = 4.36

Molecular weight: 29.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D3R1T8|A0A0D3R1T8_9RHAB Phosphoprotein OS=Radi vesiculovirus OX=1972566 PE=3 SV=1
MM1 pKa = 7.6KK2 pKa = 10.18GFKK5 pKa = 10.85AMFSKK10 pKa = 10.63KK11 pKa = 9.62KK12 pKa = 9.46SKK14 pKa = 10.03KK15 pKa = 9.51GKK17 pKa = 9.14EE18 pKa = 3.62IKK20 pKa = 10.62AKK22 pKa = 10.84GKK24 pKa = 10.87GKK26 pKa = 10.24DD27 pKa = 3.16KK28 pKa = 11.02NKK30 pKa = 10.43QYY32 pKa = 11.24DD33 pKa = 3.59EE34 pKa = 4.7DD35 pKa = 4.2EE36 pKa = 4.53RR37 pKa = 11.84PPAYY41 pKa = 10.55FNVAPEE47 pKa = 4.24WGSASAPMFGYY58 pKa = 10.44DD59 pKa = 4.53EE60 pKa = 4.98YY61 pKa = 11.02IEE63 pKa = 4.43SQSSIQSLKK72 pKa = 9.45IQFRR76 pKa = 11.84YY77 pKa = 9.95SLEE80 pKa = 4.06VTVDD84 pKa = 3.3YY85 pKa = 10.75PFANFFEE92 pKa = 5.04ALQSMRR98 pKa = 11.84NWKK101 pKa = 9.38IDD103 pKa = 3.26YY104 pKa = 9.19TGYY107 pKa = 10.33QNKK110 pKa = 9.82KK111 pKa = 9.15SIYY114 pKa = 8.97NIIMMYY120 pKa = 8.01ATKK123 pKa = 10.43RR124 pKa = 11.84LRR126 pKa = 11.84AGPRR130 pKa = 11.84GLQGRR135 pKa = 11.84KK136 pKa = 5.82STEE139 pKa = 3.63YY140 pKa = 10.09SAEE143 pKa = 3.73GSGRR147 pKa = 11.84YY148 pKa = 6.75TLHH151 pKa = 7.24HH152 pKa = 7.3DD153 pKa = 3.92LGDD156 pKa = 3.64LSGMRR161 pKa = 11.84FAEE164 pKa = 4.15EE165 pKa = 3.84RR166 pKa = 11.84FVRR169 pKa = 11.84TWQDD173 pKa = 2.89QLRR176 pKa = 11.84RR177 pKa = 11.84GTINFYY183 pKa = 10.44VWLGEE188 pKa = 3.94TDD190 pKa = 4.28DD191 pKa = 4.77NSNLPPLICPGDD203 pKa = 3.6FKK205 pKa = 11.28DD206 pKa = 3.67ASEE209 pKa = 4.75FNMSCEE215 pKa = 3.64IMGIRR220 pKa = 11.84VEE222 pKa = 4.19VQPDD226 pKa = 3.56NQWVVKK232 pKa = 9.65EE233 pKa = 4.01AA234 pKa = 3.52

Molecular weight: 27.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3577

234

2100

715.4

81.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.284 ± 0.883

1.594 ± 0.241

6.039 ± 0.616

5.927 ± 0.58

4.389 ± 0.214

6.458 ± 0.443

2.572 ± 0.23

6.458 ± 0.651

5.563 ± 0.624

9.785 ± 1.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.544 ± 0.152

4.166 ± 0.381

4.501 ± 0.446

3.327 ± 0.342

6.346 ± 0.589

9.365 ± 0.483

5.088 ± 0.436

5.396 ± 0.593

2.041 ± 0.269

3.159 ± 0.279
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski