Dehalogenimonas formicexedens

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Chloroflexi; Dehalococcoidia; Dehalogenimonas

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2117 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1P8F4T9|A0A1P8F4T9_9CHLR tRNA nucleotidyltransferase (CCA-adding enzyme) OS=Dehalogenimonas formicexedens OX=1839801 GN=cca PE=3 SV=1
MM1 pKa = 7.48TKK3 pKa = 10.24KK4 pKa = 8.73QTLFYY9 pKa = 10.22KK10 pKa = 10.35VAIIAAGLLATMAMLFAAIGPTKK33 pKa = 9.96TDD35 pKa = 3.2AAGGSVTQTSLGWRR49 pKa = 11.84NGPNAQVWGNGNYY62 pKa = 10.45GEE64 pKa = 4.41YY65 pKa = 10.26PEE67 pKa = 5.1GDD69 pKa = 3.16YY70 pKa = 10.11WQSQILITNGTSAAIDD86 pKa = 3.08ISGFGFILDD95 pKa = 4.73FYY97 pKa = 11.21NSGTVGVDD105 pKa = 2.99WVKK108 pKa = 11.11NLAWSMTPSAYY119 pKa = 9.72FVAGDD124 pKa = 4.35GPSDD128 pKa = 3.67RR129 pKa = 11.84YY130 pKa = 10.38PYY132 pKa = 8.64TGHH135 pKa = 6.76VAGDD139 pKa = 4.34DD140 pKa = 3.46IGLSDD145 pKa = 5.03WKK147 pKa = 9.91TGWTPFTPKK156 pKa = 10.02VINMPWDD163 pKa = 4.32PGTDD167 pKa = 3.16SYY169 pKa = 11.08ITTEE173 pKa = 4.15SQTAPAASHH182 pKa = 6.23FWGGFDD188 pKa = 4.18VNPPPTMLQPGEE200 pKa = 3.99SLAIYY205 pKa = 8.84FEE207 pKa = 4.14PHH209 pKa = 6.22LALTFIWSHH218 pKa = 5.11GAEE221 pKa = 4.02NLLPQIDD228 pKa = 4.0GVYY231 pKa = 8.96PGSGGTPTTFDD242 pKa = 3.95RR243 pKa = 11.84PWTAQYY249 pKa = 10.92NGAGFYY255 pKa = 10.21PGSSLHH261 pKa = 6.2GSIVYY266 pKa = 10.4SGLKK270 pKa = 9.05TFQLPSGAVVNGVISGYY287 pKa = 10.44KK288 pKa = 10.44YY289 pKa = 10.39NDD291 pKa = 3.45KK292 pKa = 10.85DD293 pKa = 3.63VSGTFTAGDD302 pKa = 3.47VGIPGWPIKK311 pKa = 10.57LYY313 pKa = 9.62ATVEE317 pKa = 4.27GVPITVSTVTDD328 pKa = 3.42SNGFYY333 pKa = 10.5QFTNLPYY340 pKa = 8.7GTYY343 pKa = 9.71SVKK346 pKa = 10.21EE347 pKa = 3.94APEE350 pKa = 4.19NGASIPAGYY359 pKa = 10.53EE360 pKa = 3.85NFVHH364 pKa = 6.7SFPANGTISGIVLTSPAPVSANNNFFNYY392 pKa = 8.3GTGKK396 pKa = 8.74LTVTKK401 pKa = 10.26SVVLGSVVNPAGISEE416 pKa = 4.6TFTIHH421 pKa = 3.52VTGPGGYY428 pKa = 9.17SHH430 pKa = 8.08DD431 pKa = 3.5ITFTLTNGVLQSPTSVTLEE450 pKa = 3.74GLIPGSYY457 pKa = 8.74TVSEE461 pKa = 4.72DD462 pKa = 3.43NPGAEE467 pKa = 4.02WTVTGGGSVTVNSGQTATSTVTNTFKK493 pKa = 10.76PGSLEE498 pKa = 3.57ITKK501 pKa = 10.69VIDD504 pKa = 3.45FNGAVNSASIDD515 pKa = 3.25EE516 pKa = 4.48TFTVKK521 pKa = 10.25VVGPSYY527 pKa = 10.14PGEE530 pKa = 4.35GTTHH534 pKa = 6.54QFVLDD539 pKa = 3.74NGAIVAPNPWLLTGLIPGDD558 pKa = 3.66YY559 pKa = 10.34TITEE563 pKa = 3.98VDD565 pKa = 4.91AGAEE569 pKa = 3.94WTEE572 pKa = 4.2TVPASAVAVSAGGVATADD590 pKa = 3.39VTNDD594 pKa = 3.48YY595 pKa = 11.16VPGSLEE601 pKa = 3.57ITKK604 pKa = 10.69VIDD607 pKa = 3.45FNGAVNSASIDD618 pKa = 3.25EE619 pKa = 4.48TFTVKK624 pKa = 10.25VVGPSYY630 pKa = 10.14PGEE633 pKa = 4.35GTTHH637 pKa = 6.54QFVLDD642 pKa = 3.74NGAIVAPNPWLLTGLIPGDD661 pKa = 3.66YY662 pKa = 10.34TITEE666 pKa = 3.98VDD668 pKa = 4.91AGAEE672 pKa = 3.94WTEE675 pKa = 4.2TVPASAVAVSAGVKK689 pKa = 8.85ATADD693 pKa = 3.44VTNDD697 pKa = 3.48YY698 pKa = 11.16VPGSLEE704 pKa = 3.42ITKK707 pKa = 10.31IIDD710 pKa = 3.12FNGAVNSASIDD721 pKa = 3.25EE722 pKa = 4.48TFTVKK727 pKa = 10.25VVGPSYY733 pKa = 10.14PGEE736 pKa = 4.35GTTHH740 pKa = 6.54QFVLDD745 pKa = 3.74NGAIVAPNPWLLTGLIPGDD764 pKa = 3.66YY765 pKa = 10.34TITEE769 pKa = 3.98VDD771 pKa = 4.91AGAEE775 pKa = 3.94WTEE778 pKa = 4.2TVPASAVAVSAGVKK792 pKa = 8.85ATADD796 pKa = 3.44VTNDD800 pKa = 3.48YY801 pKa = 11.16VPGSLEE807 pKa = 3.57ITKK810 pKa = 10.69VIDD813 pKa = 3.45FNGAVNSASIDD824 pKa = 3.25EE825 pKa = 4.48TFTVKK830 pKa = 10.25VVGPSYY836 pKa = 10.14PGEE839 pKa = 4.35GTTHH843 pKa = 6.54QFVLDD848 pKa = 3.74NGAIVAPNPWLLTGLIPGDD867 pKa = 3.66YY868 pKa = 10.34TITEE872 pKa = 3.98VDD874 pKa = 4.91AGAEE878 pKa = 3.94WTEE881 pKa = 4.2TVPASAVAVSAGGVATADD899 pKa = 3.39VTNDD903 pKa = 3.48YY904 pKa = 11.16VPGSLEE910 pKa = 3.57ITKK913 pKa = 10.69VIDD916 pKa = 3.45FNGAVNSASIDD927 pKa = 3.25EE928 pKa = 4.48TFTVKK933 pKa = 10.25VVGPSYY939 pKa = 10.14PGEE942 pKa = 4.35GTTHH946 pKa = 6.54QFVLDD951 pKa = 3.74NGAIVAPNPWLLTGLIPGDD970 pKa = 3.66YY971 pKa = 10.34TITEE975 pKa = 3.98VDD977 pKa = 4.91AGAEE981 pKa = 3.94WTEE984 pKa = 4.2TVPASAVAVSAGVKK998 pKa = 8.85ATADD1002 pKa = 3.44VTNDD1006 pKa = 3.48YY1007 pKa = 11.16VPGSLEE1013 pKa = 3.57ITKK1016 pKa = 10.69VIDD1019 pKa = 3.45FNGAVNSASIDD1030 pKa = 3.25EE1031 pKa = 4.48TFTVKK1036 pKa = 10.25VVGPSYY1042 pKa = 10.14PGEE1045 pKa = 4.35GTTHH1049 pKa = 6.54QFVLDD1054 pKa = 3.74NGAIVAPNPWLLTGLIPGDD1073 pKa = 3.66YY1074 pKa = 10.34TITEE1078 pKa = 3.98VDD1080 pKa = 4.91AGAEE1084 pKa = 3.94WTEE1087 pKa = 4.2TVPASAVAVSAGVKK1101 pKa = 8.85ATADD1105 pKa = 3.44VTNDD1109 pKa = 3.48YY1110 pKa = 11.16VPGSLEE1116 pKa = 3.42ITKK1119 pKa = 10.31IIDD1122 pKa = 3.12FNGAVNSASIDD1133 pKa = 3.25EE1134 pKa = 4.48TFTVKK1139 pKa = 10.25VVGPSYY1145 pKa = 10.14PGEE1148 pKa = 4.35GTTHH1152 pKa = 6.54QFVLDD1157 pKa = 3.74NGAIVAPNPWLLTGLIPGDD1176 pKa = 3.66YY1177 pKa = 10.34TITEE1181 pKa = 3.98VDD1183 pKa = 4.91AGAEE1187 pKa = 3.94WTEE1190 pKa = 4.2TVPASAVAVSAGVKK1204 pKa = 8.85ATADD1208 pKa = 3.44VTNDD1212 pKa = 3.48YY1213 pKa = 11.16VPGSLEE1219 pKa = 3.57ITKK1222 pKa = 10.69VIDD1225 pKa = 3.45FNGAVNSASIDD1236 pKa = 3.25EE1237 pKa = 4.48TFTVKK1242 pKa = 10.25VVGPSYY1248 pKa = 10.14PGEE1251 pKa = 4.35GTTHH1255 pKa = 6.54QFVLDD1260 pKa = 3.74NGAIVAPNPWLLTGLIPGDD1279 pKa = 3.66YY1280 pKa = 10.34TITEE1284 pKa = 3.98VDD1286 pKa = 4.91AGAEE1290 pKa = 3.94WTEE1293 pKa = 4.2TVPASAVAVSAGGVATADD1311 pKa = 3.39VTNDD1315 pKa = 3.48YY1316 pKa = 11.16VPGSLEE1322 pKa = 3.57ITKK1325 pKa = 10.69VIDD1328 pKa = 3.45FNGAVNSASIDD1339 pKa = 3.25EE1340 pKa = 4.48TFTVKK1345 pKa = 10.25VVGPSYY1351 pKa = 10.14PGEE1354 pKa = 4.35GTTHH1358 pKa = 6.54QFVLDD1363 pKa = 3.74NGAIVAPNPWLLTGLIPGDD1382 pKa = 3.66YY1383 pKa = 10.34TITEE1387 pKa = 3.98VDD1389 pKa = 4.91AGAEE1393 pKa = 3.94WTEE1396 pKa = 4.2TVPASAVAVSAGVKK1410 pKa = 8.85ATADD1414 pKa = 3.44VTNDD1418 pKa = 3.48YY1419 pKa = 11.16VPGSLEE1425 pKa = 3.42ITKK1428 pKa = 10.31IIDD1431 pKa = 3.12FNGAVNSASIDD1442 pKa = 3.25EE1443 pKa = 4.48TFTVKK1448 pKa = 10.25VVGPSYY1454 pKa = 10.14PGEE1457 pKa = 4.35GTTHH1461 pKa = 6.54QFVLDD1466 pKa = 3.74NGAIVAPNPWLLTGLIPGDD1485 pKa = 3.66YY1486 pKa = 10.34TITEE1490 pKa = 3.98VDD1492 pKa = 4.91AGAEE1496 pKa = 3.94WTEE1499 pKa = 4.2TVPASAVAVSAGGVATADD1517 pKa = 3.39VTNDD1521 pKa = 3.48YY1522 pKa = 11.16VPGSLEE1528 pKa = 3.57ITKK1531 pKa = 10.69VIDD1534 pKa = 3.45FNGAVNSASIDD1545 pKa = 3.25EE1546 pKa = 4.48TFTVKK1551 pKa = 10.25VVGPSYY1557 pKa = 10.14PGEE1560 pKa = 4.35GTTHH1564 pKa = 6.54QFVLDD1569 pKa = 3.74NGAIVAPNPWLLTGLIPGDD1588 pKa = 3.66YY1589 pKa = 10.34TITEE1593 pKa = 3.98VDD1595 pKa = 4.91AGAEE1599 pKa = 3.94WTEE1602 pKa = 4.2TVPASAVAVSAGVKK1616 pKa = 8.85ATADD1620 pKa = 3.44VTNDD1624 pKa = 3.48YY1625 pKa = 11.16VPGSLEE1631 pKa = 3.42ITKK1634 pKa = 10.31IIDD1637 pKa = 3.12FNGAVNSASIDD1648 pKa = 3.25EE1649 pKa = 4.48TFTVKK1654 pKa = 10.25VVGPSYY1660 pKa = 10.14PGEE1663 pKa = 4.35GTTHH1667 pKa = 6.54QFVLDD1672 pKa = 3.74NGAIVAPNPWLLTGLIPGDD1691 pKa = 3.66YY1692 pKa = 10.34TITEE1696 pKa = 3.98VDD1698 pKa = 4.91AGAEE1702 pKa = 3.94WTEE1705 pKa = 4.2TVPASAVAVSAGVKK1719 pKa = 8.85ATADD1723 pKa = 3.47VTNDD1727 pKa = 3.51FVPGSLTITKK1737 pKa = 9.72VVVLGAYY1744 pKa = 8.79PFASTTTLDD1753 pKa = 3.44FTVKK1757 pKa = 8.92VTGPSYY1763 pKa = 10.21PGPDD1767 pKa = 3.08GTTLTFNLVNGVISGAQTLDD1787 pKa = 3.21NLIPGVYY1794 pKa = 8.82TVTEE1798 pKa = 4.15TDD1800 pKa = 3.74PGVAWTVTNLTGNVTVDD1817 pKa = 3.61PGTPTATRR1825 pKa = 11.84TITNTLKK1832 pKa = 10.63QPNTTVTIGSDD1843 pKa = 2.83TWEE1846 pKa = 4.28TFPGGNVTITVTEE1859 pKa = 4.38EE1860 pKa = 3.72NTGDD1864 pKa = 3.58VPLSNVSVVVTQNDD1878 pKa = 4.2GSPLTLSAPPTSGDD1892 pKa = 3.52ANTDD1896 pKa = 3.8GILDD1900 pKa = 3.94TDD1902 pKa = 4.25EE1903 pKa = 3.95TWTWVYY1909 pKa = 9.69LTTISVDD1916 pKa = 3.35TTFQATGHH1924 pKa = 5.69GTDD1927 pKa = 4.09PLGNDD1932 pKa = 2.75ITVPNYY1938 pKa = 7.96PTEE1941 pKa = 4.0QDD1943 pKa = 3.51DD1944 pKa = 4.48VFVEE1948 pKa = 4.45VNGATRR1954 pKa = 11.84TIGFWKK1960 pKa = 7.6THH1962 pKa = 4.69WDD1964 pKa = 3.48FTEE1967 pKa = 4.71HH1968 pKa = 6.5VFTDD1972 pKa = 3.74PTGLNSNINLGTWGGKK1988 pKa = 6.03TWTITTMEE1996 pKa = 4.17QLMGLLWANTAKK2008 pKa = 10.78NADD2011 pKa = 3.86EE2012 pKa = 4.39TSSSRR2017 pKa = 11.84LTIDD2021 pKa = 2.86QAKK2024 pKa = 9.6IHH2026 pKa = 5.92TAQQALAAILNDD2038 pKa = 3.38AMAGGAPLPVTLTDD2052 pKa = 3.06IVGVLEE2058 pKa = 4.57GNSIGQVRR2066 pKa = 11.84SLGSTLDD2073 pKa = 3.41AYY2075 pKa = 11.42NNSGDD2080 pKa = 4.58NIALDD2085 pKa = 3.88PSLPPTKK2092 pKa = 10.3KK2093 pKa = 10.48GDD2095 pKa = 3.39EE2096 pKa = 4.37GKK2098 pKa = 9.83PKK2100 pKa = 10.63DD2101 pKa = 4.07LADD2104 pKa = 3.93IPWANTTPEE2113 pKa = 3.88APKK2116 pKa = 10.63GKK2118 pKa = 10.09KK2119 pKa = 9.15

Molecular weight: 219.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1P8F9V0|A0A1P8F9V0_9CHLR 4Fe-4S binding domain-containing protein OS=Dehalogenimonas formicexedens OX=1839801 GN=Dform_01895 PE=4 SV=1
MM1 pKa = 7.87PDD3 pKa = 2.77IMSRR7 pKa = 11.84AIIQSGGGGGYY18 pKa = 9.41IEE20 pKa = 4.81GGRR23 pKa = 11.84VKK25 pKa = 10.56NPPLQCSDD33 pKa = 3.64SQTVAAGLQTSADD46 pKa = 3.33PSLRR50 pKa = 11.84QNNEE54 pKa = 3.35RR55 pKa = 11.84CVRR58 pKa = 11.84GWNGGGRR65 pKa = 11.84VKK67 pKa = 10.65NPPLQCPGAKK77 pKa = 9.51PGQPVSRR84 pKa = 11.84PAQIPVFAKK93 pKa = 8.57ITRR96 pKa = 11.84GAFDD100 pKa = 4.89DD101 pKa = 4.28EE102 pKa = 4.79PGEE105 pKa = 4.69GGLKK109 pKa = 8.37TRR111 pKa = 11.84PYY113 pKa = 10.03DD114 pKa = 3.33TGRR117 pKa = 11.84KK118 pKa = 8.31PGAPGVLWRR127 pKa = 11.84SRR129 pKa = 11.84RR130 pKa = 11.84RR131 pKa = 11.84RR132 pKa = 11.84DD133 pKa = 2.96SGLRR137 pKa = 11.84RR138 pKa = 11.84NDD140 pKa = 2.9KK141 pKa = 10.69RR142 pKa = 11.84HH143 pKa = 6.25LKK145 pKa = 10.76DD146 pKa = 3.04EE147 pKa = 4.29TGRR150 pKa = 11.84AGG152 pKa = 3.39

Molecular weight: 16.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2117

0

2117

607201

29

2119

286.8

31.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.503 ± 0.06

1.161 ± 0.023

5.135 ± 0.034

6.152 ± 0.062

4.038 ± 0.04

8.002 ± 0.056

1.862 ± 0.021

6.676 ± 0.047

5.169 ± 0.052

9.881 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.444 ± 0.028

3.458 ± 0.031

4.792 ± 0.038

3.059 ± 0.035

5.67 ± 0.057

6.145 ± 0.039

5.581 ± 0.061

7.328 ± 0.048

1.168 ± 0.021

2.777 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski