Rhizorhabdus dicambivorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Rhizorhabdus

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4856 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2A4FZA5|A0A2A4FZA5_9SPHN TonB-dependent receptor OS=Rhizorhabdus dicambivorans OX=1850238 GN=COO09_07955 PE=3 SV=1
MM1 pKa = 7.19STPTSNSVTAEE12 pKa = 4.28RR13 pKa = 11.84ITLPADD19 pKa = 3.88PDD21 pKa = 4.02LSSLTHH27 pKa = 5.92GSRR30 pKa = 11.84WVATGATTSLTYY42 pKa = 10.58SFPINAGNWANPYY55 pKa = 10.45SPLNEE60 pKa = 4.17PSTGGVIPLDD70 pKa = 3.43AAAATGAVTALQLWSRR86 pKa = 11.84YY87 pKa = 10.03ANISFAATSDD97 pKa = 3.07TGANVGDD104 pKa = 3.33IRR106 pKa = 11.84FAYY109 pKa = 9.08TRR111 pKa = 11.84DD112 pKa = 3.19EE113 pKa = 4.3DD114 pKa = 4.3AAAHH118 pKa = 6.76AYY120 pKa = 10.15LPSSGPAAGDD130 pKa = 2.75IWLDD134 pKa = 3.36STTDD138 pKa = 3.55FGGFEE143 pKa = 4.08RR144 pKa = 11.84GSFGLFTLLHH154 pKa = 5.89EE155 pKa = 4.85VGHH158 pKa = 6.45ALGLKK163 pKa = 10.15HH164 pKa = 6.45PFEE167 pKa = 5.32SSTLNEE173 pKa = 4.17QILDD177 pKa = 3.89PEE179 pKa = 4.67LDD181 pKa = 4.0SVNSTVMSYY190 pKa = 11.21NLYY193 pKa = 10.65SDD195 pKa = 5.69LPASDD200 pKa = 4.44YY201 pKa = 11.23GISYY205 pKa = 10.56LPTTPMQLDD214 pKa = 3.88IEE216 pKa = 4.54AVQALYY222 pKa = 10.47GARR225 pKa = 11.84PFNTDD230 pKa = 2.89DD231 pKa = 3.46NEE233 pKa = 4.42YY234 pKa = 10.38VFNSGSQYY242 pKa = 10.75FEE244 pKa = 4.52TIYY247 pKa = 11.11DD248 pKa = 3.51SGGNDD253 pKa = 3.4TIIWNSSTEE262 pKa = 3.85EE263 pKa = 3.75AVIDD267 pKa = 4.33LEE269 pKa = 4.46SGSWSALGDD278 pKa = 3.66PLITFDD284 pKa = 4.18RR285 pKa = 11.84QGEE288 pKa = 4.6VVKK291 pKa = 10.89VDD293 pKa = 3.68YY294 pKa = 8.52FTVAIFSEE302 pKa = 4.37TMIEE306 pKa = 4.04NATGGGGDD314 pKa = 3.85DD315 pKa = 5.31LIYY318 pKa = 11.14GNAVANRR325 pKa = 11.84LLGSDD330 pKa = 3.21GHH332 pKa = 7.84DD333 pKa = 4.56DD334 pKa = 3.19IFGYY338 pKa = 10.57EE339 pKa = 4.16GADD342 pKa = 3.49TLVGGAGNDD351 pKa = 3.54HH352 pKa = 7.08LYY354 pKa = 10.95GRR356 pKa = 11.84AASGGADD363 pKa = 3.77GEE365 pKa = 4.72DD366 pKa = 4.05SLSGGAGSDD375 pKa = 3.62YY376 pKa = 11.17LQGNAGNDD384 pKa = 3.44MLDD387 pKa = 3.51GGEE390 pKa = 4.11GSDD393 pKa = 4.35RR394 pKa = 11.84INGGGSDD401 pKa = 3.74DD402 pKa = 5.18SIFGGAGNDD411 pKa = 3.61TVNGNLGSDD420 pKa = 4.16VISGGDD426 pKa = 3.35GDD428 pKa = 4.34DD429 pKa = 3.89SLRR432 pKa = 11.84GGQGADD438 pKa = 3.71SISGGTGNDD447 pKa = 3.2ILSGDD452 pKa = 4.03LGEE455 pKa = 6.02DD456 pKa = 3.1ILSGGDD462 pKa = 3.52GNDD465 pKa = 3.26LFVVGGSGSPLAQPDD480 pKa = 4.16RR481 pKa = 11.84ILDD484 pKa = 3.87FTDD487 pKa = 3.48GTDD490 pKa = 2.86WVAIGFAPAAILTGAAQANAGAAATTAQQLLDD522 pKa = 3.54NRR524 pKa = 11.84EE525 pKa = 4.17GNGEE529 pKa = 4.01VAALAVGADD538 pKa = 3.34TYY540 pKa = 11.59LFYY543 pKa = 11.08ASNGGGMIDD552 pKa = 3.41SAIVVVGIAPQAFGVADD569 pKa = 4.7FGG571 pKa = 4.47

Molecular weight: 58.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2A4FRD8|A0A2A4FRD8_9SPHN MFS transporter OS=Rhizorhabdus dicambivorans OX=1850238 GN=COO09_17390 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 8.96RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.61GFRR19 pKa = 11.84SRR21 pKa = 11.84SATPGGRR28 pKa = 11.84KK29 pKa = 9.04VLAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.02KK41 pKa = 10.61LSAA44 pKa = 4.03

Molecular weight: 5.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4856

0

4856

1542366

22

4544

317.6

34.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.227 ± 0.052

0.825 ± 0.011

5.958 ± 0.027

5.444 ± 0.036

3.529 ± 0.018

9.002 ± 0.057

2.049 ± 0.019

5.297 ± 0.02

2.892 ± 0.031

9.945 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.446 ± 0.016

2.454 ± 0.025

5.35 ± 0.025

3.038 ± 0.018

7.712 ± 0.041

5.3 ± 0.026

4.984 ± 0.029

6.924 ± 0.03

1.398 ± 0.016

2.227 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski