Moraxellaceae bacterium HYN0046

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Aquirhabdus

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3297 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A345P682|A0A345P682_9GAMM Rhodanese domain-containing protein OS=Moraxellaceae bacterium HYN0046 OX=2283318 GN=HYN46_08055 PE=4 SV=1
MM1 pKa = 7.7KK2 pKa = 10.11KK3 pKa = 9.69YY4 pKa = 10.65QCIVCGWIYY13 pKa = 11.06DD14 pKa = 4.1EE15 pKa = 5.82AIGWPDD21 pKa = 3.5DD22 pKa = 4.45GIPAGTLWDD31 pKa = 5.92DD32 pKa = 4.69IPDD35 pKa = 3.34SWVCPDD41 pKa = 4.2CGVGKK46 pKa = 10.5ADD48 pKa = 3.78FEE50 pKa = 4.63MIEE53 pKa = 4.07VV54 pKa = 3.62

Molecular weight: 6.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A345PAM8|A0A345PAM8_9GAMM Ribosome maturation factor RimP OS=Moraxellaceae bacterium HYN0046 OX=2283318 GN=rimP PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.53RR3 pKa = 11.84TFQPSSLKK11 pKa = 10.08RR12 pKa = 11.84KK13 pKa = 8.62RR14 pKa = 11.84VHH16 pKa = 6.43GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.35NGRR28 pKa = 11.84LVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LTVV44 pKa = 3.04

Molecular weight: 5.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3297

0

3297

1068716

22

2422

324.1

35.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.69 ± 0.043

0.823 ± 0.014

5.331 ± 0.035

5.095 ± 0.047

3.938 ± 0.031

7.152 ± 0.04

2.439 ± 0.026

6.262 ± 0.036

4.471 ± 0.04

10.574 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.365 ± 0.021

3.908 ± 0.034

4.57 ± 0.027

4.626 ± 0.034

5.016 ± 0.036

6.577 ± 0.076

5.943 ± 0.04

7.014 ± 0.036

1.32 ± 0.017

2.887 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski