Corynebacterium argentoratense DSM 44202

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium argentoratense

Average proteome isoelectric point is 5.86

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1870 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U3GZV5|U3GZV5_9CORY Uncharacterized protein OS=Corynebacterium argentoratense DSM 44202 OX=1348662 GN=CARG_08100 PE=4 SV=1
MM1 pKa = 7.66PPDD4 pKa = 4.21PFEE7 pKa = 5.41GDD9 pKa = 3.66PNDD12 pKa = 3.87PASFISDD19 pKa = 3.34EE20 pKa = 4.24DD21 pKa = 3.99DD22 pKa = 3.63AAEE25 pKa = 4.18MLPLTPEE32 pKa = 3.95EE33 pKa = 4.06EE34 pKa = 4.14QQVRR38 pKa = 11.84EE39 pKa = 4.91DD40 pKa = 3.94YY41 pKa = 11.35DD42 pKa = 3.82LLCTFKK48 pKa = 11.08AHH50 pKa = 7.19LEE52 pKa = 4.07PEE54 pKa = 5.01GYY56 pKa = 10.48LGICMTCPDD65 pKa = 5.04CDD67 pKa = 3.44AMHH70 pKa = 6.57YY71 pKa = 9.95YY72 pKa = 10.35DD73 pKa = 4.06WEE75 pKa = 4.03IMRR78 pKa = 11.84TNMLASLRR86 pKa = 11.84GEE88 pKa = 4.09LAPVHH93 pKa = 6.21EE94 pKa = 5.28PSPNPDD100 pKa = 2.93PMRR103 pKa = 11.84YY104 pKa = 7.52VTWDD108 pKa = 3.42FCHH111 pKa = 6.47GWLACAEE118 pKa = 4.1TAEE121 pKa = 4.61RR122 pKa = 11.84KK123 pKa = 7.44QHH125 pKa = 5.35MEE127 pKa = 3.43ALKK130 pKa = 10.53AVKK133 pKa = 10.11DD134 pKa = 3.77VFFTDD139 pKa = 3.13QEE141 pKa = 4.66LYY143 pKa = 10.88DD144 pKa = 4.54EE145 pKa = 4.83EE146 pKa = 4.21TDD148 pKa = 3.79EE149 pKa = 4.93YY150 pKa = 10.61IGPSPEE156 pKa = 3.69EE157 pKa = 4.11SEE159 pKa = 5.51AEE161 pKa = 3.98MFEE164 pKa = 4.11NMSAEE169 pKa = 4.25EE170 pKa = 3.76YY171 pKa = 10.52SYY173 pKa = 10.98WFLEE177 pKa = 4.01TDD179 pKa = 3.24VDD181 pKa = 4.34DD182 pKa = 6.19GPVTDD187 pKa = 5.2SDD189 pKa = 4.26GPTDD193 pKa = 3.57GEE195 pKa = 4.22EE196 pKa = 4.43PEE198 pKa = 4.66RR199 pKa = 11.84GAA201 pKa = 5.05

Molecular weight: 22.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U3GSX2|U3GSX2_9CORY Uncharacterized protein OS=Corynebacterium argentoratense DSM 44202 OX=1348662 GN=CARG_01035 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.63KK15 pKa = 9.39KK16 pKa = 9.04HH17 pKa = 5.39RR18 pKa = 11.84KK19 pKa = 5.37MLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1870

0

1870

603294

30

3047

322.6

34.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.94 ± 0.082

0.883 ± 0.018

6.236 ± 0.051

5.96 ± 0.061

3.236 ± 0.038

8.432 ± 0.055

2.216 ± 0.029

4.969 ± 0.045

3.24 ± 0.051

9.352 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.275 ± 0.023

2.837 ± 0.038

5.086 ± 0.041

3.485 ± 0.035

6.05 ± 0.053

5.875 ± 0.044

5.877 ± 0.054

8.548 ± 0.063

1.308 ± 0.024

2.194 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski