Soil-borne cereal mosaic virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Virgaviridae; Furovirus

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9QCE7|Q9QCE7_9VIRU Putative movement protein OS=Soil-borne cereal mosaic virus OX=100887 GN=ORF3 PE=4 SV=1
MM1 pKa = 8.27DD2 pKa = 5.47KK3 pKa = 10.11LTRR6 pKa = 11.84LKK8 pKa = 11.35GEE10 pKa = 4.17VDD12 pKa = 3.63RR13 pKa = 11.84SLQKK17 pKa = 10.96AADD20 pKa = 3.68KK21 pKa = 9.92VTAEE25 pKa = 4.39STEE28 pKa = 4.14SLQSKK33 pKa = 8.96VVVQLPQMAVKK44 pKa = 10.55NGYY47 pKa = 7.5TGYY50 pKa = 10.76NKK52 pKa = 9.98EE53 pKa = 4.34LNLMASIHH61 pKa = 5.47PFIRR65 pKa = 11.84LGTLISQIEE74 pKa = 4.46GWQATRR80 pKa = 11.84ASILTHH86 pKa = 6.51LGVMLNGVSKK96 pKa = 10.86LGEE99 pKa = 3.82RR100 pKa = 11.84NFFSRR105 pKa = 11.84QKK107 pKa = 10.75RR108 pKa = 11.84FGTHH112 pKa = 4.74TQDD115 pKa = 3.63GDD117 pKa = 4.7EE118 pKa = 4.48IFCDD122 pKa = 3.66LGGEE126 pKa = 3.95AVMQIITRR134 pKa = 11.84LTVSLQSAKK143 pKa = 11.07GEE145 pKa = 4.16GSQTRR150 pKa = 11.84NAMIGTTPTTNQFEE164 pKa = 4.61GEE166 pKa = 4.22EE167 pKa = 3.99QGQTDD172 pKa = 3.5QTLAISNALAEE183 pKa = 4.56FMTFIHH189 pKa = 6.29TKK191 pKa = 10.66DD192 pKa = 3.26FTTNEE197 pKa = 5.1CYY199 pKa = 9.71TQDD202 pKa = 3.26SFEE205 pKa = 4.94AKK207 pKa = 10.26FNLKK211 pKa = 9.68WEE213 pKa = 4.57GTSS216 pKa = 3.25

Molecular weight: 23.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9QCE8|Q9QCE8_9VIRU Replicase OS=Soil-borne cereal mosaic virus OX=100887 GN=ORF1 PE=4 SV=1
MM1 pKa = 7.51GSKK4 pKa = 9.97DD5 pKa = 3.5VKK7 pKa = 10.59GDD9 pKa = 3.58SFEE12 pKa = 4.35SVYY15 pKa = 11.47NKK17 pKa = 10.12ILDD20 pKa = 4.02LQTEE24 pKa = 4.54GAVGADD30 pKa = 3.11SLKK33 pKa = 10.16TNRR36 pKa = 11.84QRR38 pKa = 11.84SFNIEE43 pKa = 3.42NKK45 pKa = 9.46YY46 pKa = 9.71VEE48 pKa = 4.41KK49 pKa = 10.92ALVQQDD55 pKa = 3.11IATKK59 pKa = 9.51MRR61 pKa = 11.84EE62 pKa = 3.92GWTTWTKK69 pKa = 8.77TNKK72 pKa = 10.23EE73 pKa = 3.79EE74 pKa = 4.04GTPYY78 pKa = 10.91NMSYY82 pKa = 10.83SCVLLNVIPTVPRR95 pKa = 11.84GYY97 pKa = 10.36SGTVEE102 pKa = 3.61ISLIDD107 pKa = 3.63SGLSPLEE114 pKa = 3.86NVIPDD119 pKa = 3.58QTQMMEE125 pKa = 4.71LGNGPHH131 pKa = 5.95VMCFFMHH138 pKa = 6.43YY139 pKa = 10.1GIPLNDD145 pKa = 3.69EE146 pKa = 3.75GRR148 pKa = 11.84VIKK151 pKa = 10.72LSFKK155 pKa = 10.5IEE157 pKa = 3.67AEE159 pKa = 4.09MASKK163 pKa = 10.55KK164 pKa = 9.47MSVMNVYY171 pKa = 10.5SYY173 pKa = 7.61WTQKK177 pKa = 9.95QGHH180 pKa = 6.52LSVYY184 pKa = 9.15TEE186 pKa = 4.3PQRR189 pKa = 11.84STCSKK194 pKa = 10.8LLLGYY199 pKa = 10.47DD200 pKa = 3.5KK201 pKa = 10.98SLKK204 pKa = 10.61LKK206 pKa = 9.66TRR208 pKa = 11.84DD209 pKa = 3.25DD210 pKa = 3.34VRR212 pKa = 11.84RR213 pKa = 11.84FVPRR217 pKa = 11.84SLATNNLEE225 pKa = 3.93QSVPKK230 pKa = 9.86MLPNSINILKK240 pKa = 10.53EE241 pKa = 3.7NVPLFKK247 pKa = 10.61KK248 pKa = 10.67EE249 pKa = 4.1SVLDD253 pKa = 3.5LTEE256 pKa = 4.21QEE258 pKa = 4.26RR259 pKa = 11.84EE260 pKa = 4.09KK261 pKa = 10.86QKK263 pKa = 11.07KK264 pKa = 10.14LEE266 pKa = 4.07TLRR269 pKa = 11.84SVNEE273 pKa = 3.57AQRR276 pKa = 11.84RR277 pKa = 11.84KK278 pKa = 9.71SAQEE282 pKa = 3.55MQKK285 pKa = 10.7RR286 pKa = 11.84NDD288 pKa = 3.52DD289 pKa = 4.4LIRR292 pKa = 11.84ANVQKK297 pKa = 10.74QKK299 pKa = 11.03AKK301 pKa = 10.36QSEE304 pKa = 3.79IDD306 pKa = 3.63EE307 pKa = 4.33NRR309 pKa = 11.84KK310 pKa = 8.43NHH312 pKa = 6.09YY313 pKa = 9.6DD314 pKa = 3.29VSGVKK319 pKa = 10.27FGSVGSDD326 pKa = 2.64

Molecular weight: 37.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

4625

165

1816

770.8

87.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.681 ± 0.475

1.751 ± 0.283

6.724 ± 0.552

7.157 ± 0.207

4.13 ± 0.349

5.514 ± 0.561

2.097 ± 0.173

4.822 ± 0.216

7.222 ± 0.687

8.951 ± 0.225

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.789 ± 0.17

4.411 ± 0.342

2.789 ± 0.225

3.308 ± 0.614

6.054 ± 0.343

6.876 ± 0.431

6.811 ± 0.465

7.286 ± 0.36

1.189 ± 0.086

3.395 ± 0.366
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski