Sweet potato pakakuy virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus

Average proteome isoelectric point is 7.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|C4NFM5|C4NFM5_9VIRU Reverse transcriptase OS=Sweet potato pakakuy virus OX=2034762 PE=4 SV=1
MM1 pKa = 7.68RR2 pKa = 11.84RR3 pKa = 11.84PGAAAVTEE11 pKa = 4.2VGLQGEE17 pKa = 4.6GRR19 pKa = 11.84NPQGEE24 pKa = 4.16RR25 pKa = 11.84QILHH29 pKa = 6.85EE30 pKa = 4.34DD31 pKa = 3.25QIRR34 pKa = 11.84DD35 pKa = 3.61YY36 pKa = 11.41RR37 pKa = 11.84RR38 pKa = 11.84MAEE41 pKa = 4.53ARR43 pKa = 11.84YY44 pKa = 9.09QLQRR48 pKa = 11.84QVARR52 pKa = 11.84VLGRR56 pKa = 11.84PYY58 pKa = 10.66RR59 pKa = 11.84RR60 pKa = 11.84TLEE63 pKa = 4.08RR64 pKa = 11.84LMNPDD69 pKa = 3.1QNLEE73 pKa = 4.04DD74 pKa = 3.81SLSRR78 pKa = 11.84RR79 pKa = 11.84ARR81 pKa = 11.84IVPAEE86 pKa = 4.03VLYY89 pKa = 11.15SSTEE93 pKa = 3.74GTEE96 pKa = 3.76NQRR99 pKa = 11.84VYY101 pKa = 10.23IHH103 pKa = 6.96RR104 pKa = 11.84SEE106 pKa = 4.8EE107 pKa = 4.28EE108 pKa = 3.82ITCLDD113 pKa = 3.73NQQVDD118 pKa = 4.47LPLITPQSHH127 pKa = 6.0AQLLRR132 pKa = 11.84QNYY135 pKa = 8.82RR136 pKa = 11.84FIHH139 pKa = 6.17IGAIQVRR146 pKa = 11.84VQALHH151 pKa = 5.92RR152 pKa = 11.84THH154 pKa = 7.22AGTMVLVLNTDD165 pKa = 3.55RR166 pKa = 11.84RR167 pKa = 11.84WNGDD171 pKa = 2.88LSLFGGIEE179 pKa = 4.06GDD181 pKa = 3.55LTEE184 pKa = 4.75GAFMTYY190 pKa = 10.03IIPNVTMTVEE200 pKa = 4.79DD201 pKa = 4.63FCQNIMVEE209 pKa = 4.41FQTRR213 pKa = 11.84GYY215 pKa = 9.5SEE217 pKa = 4.18WVHH220 pKa = 6.03GSNLLITRR228 pKa = 11.84GMVGRR233 pKa = 11.84LSNTPNVGFNYY244 pKa = 10.03NVSAVTDD251 pKa = 3.71YY252 pKa = 11.22LVSKK256 pKa = 9.63GVRR259 pKa = 11.84ALPGRR264 pKa = 11.84RR265 pKa = 11.84YY266 pKa = 8.86STADD270 pKa = 3.0IQGLRR275 pKa = 11.84WNVRR279 pKa = 11.84RR280 pKa = 11.84PRR282 pKa = 11.84EE283 pKa = 4.08IIPRR287 pKa = 11.84RR288 pKa = 11.84PTEE291 pKa = 4.06MISRR295 pKa = 11.84NLLGGGFSLSFRR307 pKa = 11.84EE308 pKa = 4.14YY309 pKa = 10.63QPITAEE315 pKa = 3.77QRR317 pKa = 11.84RR318 pKa = 11.84AAQHH322 pKa = 6.13PEE324 pKa = 3.56EE325 pKa = 5.07DD326 pKa = 3.31ALEE329 pKa = 4.23EE330 pKa = 4.4LEE332 pKa = 4.79HH333 pKa = 6.41EE334 pKa = 4.59VLGVLDD340 pKa = 4.26VEE342 pKa = 4.71VADD345 pKa = 4.25WDD347 pKa = 3.9NLDD350 pKa = 4.12FPEE353 pKa = 5.41PDD355 pKa = 3.03PTMVNIEE362 pKa = 4.02IPEE365 pKa = 4.32PEE367 pKa = 4.18PQQPALEE374 pKa = 4.4PVEE377 pKa = 4.69HH378 pKa = 6.4LTDD381 pKa = 3.36EE382 pKa = 4.29VLGFRR387 pKa = 11.84RR388 pKa = 11.84EE389 pKa = 3.99ASSWNYY395 pKa = 10.26LGSDD399 pKa = 3.73SEE401 pKa = 4.5EE402 pKa = 3.92EE403 pKa = 3.88ALLEE407 pKa = 3.7FLYY410 pKa = 10.88YY411 pKa = 10.7RR412 pKa = 11.84NTPDD416 pKa = 5.63DD417 pKa = 3.94GPYY420 pKa = 10.37WNMEE424 pKa = 3.55YY425 pKa = 11.41SMAYY429 pKa = 8.6QQLAAALEE437 pKa = 4.42EE438 pKa = 4.44DD439 pKa = 4.01VSPNDD444 pKa = 4.41VEE446 pKa = 5.45SLDD449 pKa = 3.76KK450 pKa = 10.84NTVEE454 pKa = 5.27GGTSTPFFGGEE465 pKa = 3.61EE466 pKa = 3.84AVPPKK471 pKa = 10.6NSEE474 pKa = 4.06NSCIMCNKK482 pKa = 9.96KK483 pKa = 10.5GIPGDD488 pKa = 4.22KK489 pKa = 9.83ILCQNCMDD497 pKa = 4.18ITDD500 pKa = 4.55DD501 pKa = 3.9SDD503 pKa = 4.63DD504 pKa = 3.5EE505 pKa = 5.59RR506 pKa = 11.84EE507 pKa = 4.14VQRR510 pKa = 11.84QEE512 pKa = 3.3RR513 pKa = 11.84RR514 pKa = 11.84KK515 pKa = 9.84RR516 pKa = 11.84MQRR519 pKa = 11.84QKK521 pKa = 10.5EE522 pKa = 4.08KK523 pKa = 10.54RR524 pKa = 11.84VTPSTSDD531 pKa = 3.31QTHH534 pKa = 6.43HH535 pKa = 6.35EE536 pKa = 4.19VLGAINDD543 pKa = 3.95EE544 pKa = 4.35MPNTAEE550 pKa = 4.07EE551 pKa = 4.18FEE553 pKa = 4.46EE554 pKa = 4.36MVEE557 pKa = 3.84RR558 pKa = 11.84LYY560 pKa = 11.37AQVSQQAPEE569 pKa = 4.14ASNPAAPSTSRR580 pKa = 11.84GQSAXSPSXPPEE592 pKa = 5.29DD593 pKa = 3.42ISMGQPSYY601 pKa = 11.55APARR605 pKa = 11.84PGTTTEE611 pKa = 3.57ISGPPTFRR619 pKa = 11.84TDD621 pKa = 2.77SRR623 pKa = 11.84FLKK626 pKa = 10.56RR627 pKa = 11.84GTNNEE632 pKa = 3.78NWSLPPAQQQGGVLLTLPEE651 pKa = 4.08QMGLLNDD658 pKa = 3.33VFMRR662 pKa = 11.84WEE664 pKa = 4.3TTTLNHH670 pKa = 6.19MSLMNIQDD678 pKa = 3.69TQEE681 pKa = 3.99KK682 pKa = 8.78VDD684 pKa = 3.6YY685 pKa = 10.02MEE687 pKa = 4.8NLLGEE692 pKa = 4.36TAKK695 pKa = 10.79LAWIQWRR702 pKa = 11.84TVYY705 pKa = 10.48EE706 pKa = 4.17DD707 pKa = 3.62EE708 pKa = 4.5YY709 pKa = 10.65KK710 pKa = 10.74TIVGQAEE717 pKa = 4.2GRR719 pKa = 11.84MGTQNVISQVRR730 pKa = 11.84RR731 pKa = 11.84ILTLSDD737 pKa = 3.4PVQGSTAVQDD747 pKa = 3.32QAYY750 pKa = 9.93RR751 pKa = 11.84DD752 pKa = 3.99LEE754 pKa = 3.99RR755 pKa = 11.84LQCNDD760 pKa = 2.89VKK762 pKa = 11.76DD763 pKa = 3.78MVKK766 pKa = 10.47FLNDD770 pKa = 3.43YY771 pKa = 9.42MRR773 pKa = 11.84LATKK777 pKa = 9.62TGRR780 pKa = 11.84LYY782 pKa = 10.51MGAEE786 pKa = 4.2LSEE789 pKa = 4.31KK790 pKa = 10.39LWIKK794 pKa = 10.25MPGDD798 pKa = 3.88LGTKK802 pKa = 9.62IKK804 pKa = 11.12EE805 pKa = 4.5EE806 pKa = 4.16FNKK809 pKa = 10.21AHH811 pKa = 7.37PGAQIAVIPRR821 pKa = 11.84IFFAHH826 pKa = 7.29KK827 pKa = 10.15YY828 pKa = 10.66LEE830 pKa = 4.53DD831 pKa = 3.67RR832 pKa = 11.84CKK834 pKa = 9.92EE835 pKa = 3.78AAFARR840 pKa = 11.84SLKK843 pKa = 10.59SVSFCKK849 pKa = 10.36DD850 pKa = 2.72IPIQGYY856 pKa = 9.38YY857 pKa = 11.08GNDD860 pKa = 3.15KK861 pKa = 10.65PKK863 pKa = 8.98YY864 pKa = 7.29TPRR867 pKa = 11.84KK868 pKa = 8.22ARR870 pKa = 11.84TYY872 pKa = 9.96KK873 pKa = 10.47GKK875 pKa = 9.0PHH877 pKa = 5.84EE878 pKa = 4.09THH880 pKa = 6.01VRR882 pKa = 11.84IDD884 pKa = 3.08RR885 pKa = 11.84RR886 pKa = 11.84KK887 pKa = 8.51NLDD890 pKa = 3.53RR891 pKa = 11.84NSHH894 pKa = 5.7CKK896 pKa = 10.34CFICEE901 pKa = 4.1QPGHH905 pKa = 5.63YY906 pKa = 10.53ARR908 pKa = 11.84DD909 pKa = 3.74CPNQKK914 pKa = 10.37RR915 pKa = 11.84NINRR919 pKa = 11.84VMMFNQVNIPDD930 pKa = 3.95NYY932 pKa = 10.89DD933 pKa = 3.06IVSVSEE939 pKa = 3.81NAEE942 pKa = 4.15DD943 pKa = 3.56SDD945 pKa = 4.94AIYY948 pKa = 11.04SLTEE952 pKa = 3.94GDD954 pKa = 4.76DD955 pKa = 3.85AEE957 pKa = 4.36EE958 pKa = 4.29TNFGLVHH965 pKa = 6.65EE966 pKa = 4.76SVHH969 pKa = 6.21MITHH973 pKa = 5.09QVIGSWRR980 pKa = 11.84AYY982 pKa = 9.52IEE984 pKa = 3.95PSEE987 pKa = 4.19TQKK990 pKa = 10.47VCRR993 pKa = 11.84HH994 pKa = 5.12QWQDD998 pKa = 3.01HH999 pKa = 4.84QEE1001 pKa = 3.9IEE1003 pKa = 4.5LPGEE1007 pKa = 4.58DD1008 pKa = 2.9TCLWCKK1014 pKa = 9.98HH1015 pKa = 6.35HH1016 pKa = 6.83INIRR1020 pKa = 11.84TRR1022 pKa = 11.84SHH1024 pKa = 6.88CPACLLTVCNICSLRR1039 pKa = 11.84YY1040 pKa = 9.63LGRR1043 pKa = 11.84EE1044 pKa = 4.15VPPKK1048 pKa = 9.49AQEE1051 pKa = 3.95RR1052 pKa = 11.84VLPFPDD1058 pKa = 3.57QSALIQQQQAYY1069 pKa = 7.96MNWADD1074 pKa = 3.66QDD1076 pKa = 3.75RR1077 pKa = 11.84ARR1079 pKa = 11.84LKK1081 pKa = 10.83QEE1083 pKa = 3.79VNDD1086 pKa = 3.47EE1087 pKa = 4.09RR1088 pKa = 11.84RR1089 pKa = 11.84RR1090 pKa = 11.84GQLLFEE1096 pKa = 4.38EE1097 pKa = 4.69EE1098 pKa = 3.54RR1099 pKa = 11.84RR1100 pKa = 11.84RR1101 pKa = 11.84AEE1103 pKa = 3.87RR1104 pKa = 11.84LGDD1107 pKa = 4.06EE1108 pKa = 4.12IAQLKK1113 pKa = 10.34LRR1115 pKa = 11.84MEE1117 pKa = 4.38SMEE1120 pKa = 4.32EE1121 pKa = 3.88EE1122 pKa = 4.06QKK1124 pKa = 11.1LKK1126 pKa = 10.96NDD1128 pKa = 4.81LYY1130 pKa = 10.34TQTEE1134 pKa = 4.07KK1135 pKa = 11.07DD1136 pKa = 3.35LKK1138 pKa = 10.87NRR1140 pKa = 11.84IRR1142 pKa = 11.84VLKK1145 pKa = 9.79DD1146 pKa = 2.76KK1147 pKa = 11.14KK1148 pKa = 10.37MEE1150 pKa = 4.35LKK1152 pKa = 10.51EE1153 pKa = 4.04XLKK1156 pKa = 10.29KK1157 pKa = 10.89AKK1159 pKa = 6.61XXRR1162 pKa = 11.84YY1163 pKa = 7.59EE1164 pKa = 3.93ALEE1167 pKa = 4.2KK1168 pKa = 10.29EE1169 pKa = 4.52RR1170 pKa = 11.84KK1171 pKa = 9.28SGRR1174 pKa = 11.84KK1175 pKa = 6.39VLKK1178 pKa = 9.14MRR1180 pKa = 11.84GVAPSLKK1187 pKa = 9.95RR1188 pKa = 11.84CC1189 pKa = 3.61

Molecular weight:
136.18 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|C4NFM4|C4NFM4_9VIRU Polyprotein OS=Sweet potato pakakuy virus OX=2034762 PE=4 SV=1
MM1 pKa = 7.81NYY3 pKa = 9.97RR4 pKa = 11.84EE5 pKa = 4.17VQDD8 pKa = 3.81LPGFKK13 pKa = 9.97RR14 pKa = 11.84ALTGTASLGAEE25 pKa = 4.41GFNQPSGKK33 pKa = 7.67TQSSLDD39 pKa = 3.37TLIRR43 pKa = 11.84QNNTLLFLAGVSDD56 pKa = 5.33DD57 pKa = 4.17RR58 pKa = 11.84IQGIEE63 pKa = 4.03EE64 pKa = 3.93EE65 pKa = 4.21LVEE68 pKa = 3.89IRR70 pKa = 11.84KK71 pKa = 9.82AISKK75 pKa = 10.55RR76 pKa = 11.84EE77 pKa = 3.95TPDD80 pKa = 2.97LSGVVGQLQQLTIKK94 pKa = 10.52GKK96 pKa = 9.22APEE99 pKa = 4.02PRR101 pKa = 11.84GVLRR105 pKa = 11.84VYY107 pKa = 10.53QDD109 pKa = 3.7PYY111 pKa = 10.42LQTRR115 pKa = 11.84RR116 pKa = 11.84QINEE120 pKa = 3.71EE121 pKa = 3.76TRR123 pKa = 11.84GRR125 pKa = 11.84SSHH128 pKa = 6.57RR129 pKa = 11.84SRR131 pKa = 11.84SSRR134 pKa = 11.84GGSEE138 pKa = 4.07PPRR141 pKa = 11.84RR142 pKa = 11.84TPDD145 pKa = 3.28PPRR148 pKa = 11.84GSDD151 pKa = 3.05SS152 pKa = 3.29

Molecular weight:
16.86 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2470

142

1189

494.0

56.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.194 ± 0.813

1.457 ± 0.407

4.899 ± 0.521

8.785 ± 0.756

2.834 ± 0.508

5.951 ± 0.542

1.862 ± 0.27

6.113 ± 1.246

5.992 ± 1.333

9.109 ± 1.216

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.713 ± 0.429

4.656 ± 0.415

5.223 ± 0.39

5.709 ± 0.68

8.138 ± 0.982

5.911 ± 0.648

5.263 ± 0.229

4.818 ± 0.573

1.255 ± 0.156

2.874 ± 0.284

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski