Sulfurimonas sp. GYSZ_1

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Thiovulaceae; Sulfurimonas; unclassified Sulfurimonas

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2324 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5P8NYF1|A0A5P8NYF1_9PROT NifU family protein OS=Sulfurimonas sp. GYSZ_1 OX=2590022 GN=FJR48_01470 PE=4 SV=1
MM1 pKa = 7.63KK2 pKa = 9.41KK3 pKa = 8.4TFYY6 pKa = 11.14SLLILLSVFFTACGEE21 pKa = 4.17NTKK24 pKa = 9.08TAVVADD30 pKa = 3.69IASIEE35 pKa = 4.07IVEE38 pKa = 4.43GNISIYY44 pKa = 9.9STDD47 pKa = 3.5EE48 pKa = 4.13ATDD51 pKa = 3.67LTAMATYY58 pKa = 9.9TDD60 pKa = 3.94STTAQINDD68 pKa = 3.26AAIWNNSDD76 pKa = 3.43YY77 pKa = 10.5NTLYY81 pKa = 9.65MYY83 pKa = 10.7NGSVSAASNGGSSIVGISSGRR104 pKa = 11.84FSDD107 pKa = 4.5EE108 pKa = 3.9INVSIIKK115 pKa = 8.92LTDD118 pKa = 3.72FNITNADD125 pKa = 3.42INSTGSYY132 pKa = 9.73ILEE135 pKa = 4.13ATGTFEE141 pKa = 6.26DD142 pKa = 4.15NTSKK146 pKa = 10.84VIKK149 pKa = 10.54RR150 pKa = 11.84NIEE153 pKa = 3.48WSADD157 pKa = 3.16NGAVISVDD165 pKa = 3.33EE166 pKa = 4.92NYY168 pKa = 10.59VATITILTGDD178 pKa = 4.0TNVTATVFEE187 pKa = 4.39EE188 pKa = 4.81TNTSAATLAPITRR201 pKa = 11.84TYY203 pKa = 9.29TVNN206 pKa = 3.03

Molecular weight: 22.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5P8NYX1|A0A5P8NYX1_9PROT Helix-turn-helix transcriptional regulator OS=Sulfurimonas sp. GYSZ_1 OX=2590022 GN=FJR48_02290 PE=4 SV=1
MM1 pKa = 7.28KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.04QPHH8 pKa = 4.86NTPRR12 pKa = 11.84KK13 pKa = 7.31RR14 pKa = 11.84THH16 pKa = 6.05GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.3NGRR28 pKa = 11.84NVLSRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.84GRR39 pKa = 11.84KK40 pKa = 8.55RR41 pKa = 11.84LSVV44 pKa = 3.2

Molecular weight: 5.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2324

0

2324

743192

37

1982

319.8

36.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.345 ± 0.054

0.84 ± 0.019

6.182 ± 0.05

7.129 ± 0.053

4.894 ± 0.042

5.649 ± 0.052

1.851 ± 0.023

8.672 ± 0.052

8.93 ± 0.065

9.468 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.607 ± 0.024

5.703 ± 0.049

2.793 ± 0.028

2.839 ± 0.023

3.188 ± 0.028

6.927 ± 0.045

5.019 ± 0.044

6.124 ± 0.039

0.701 ± 0.018

4.139 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski