Rodent Torque teno virus 1

Taxonomy: Viruses; Anelloviridae; Rhotorquevirus; Torque teno rodent virus 1

Average proteome isoelectric point is 7.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|X2G8B9|X2G8B9_9VIRU ORF3 OS=Rodent Torque teno virus 1 OX=1514664 PE=4 SV=1
MM1 pKa = 7.23NVDD4 pKa = 2.66EE5 pKa = 4.83DD6 pKa = 4.48FIYY9 pKa = 10.85RR10 pKa = 11.84EE11 pKa = 4.12DD12 pKa = 3.36SWLCMIKK19 pKa = 8.47QTHH22 pKa = 5.99EE23 pKa = 4.17LFCNCTSWTKK33 pKa = 10.31HH34 pKa = 5.57LKK36 pKa = 8.96TLLDD40 pKa = 3.97FNHH43 pKa = 6.94PEE45 pKa = 3.84WRR47 pKa = 11.84GDD49 pKa = 3.79SQDD52 pKa = 3.6EE53 pKa = 4.23QPGKK57 pKa = 10.26EE58 pKa = 4.01KK59 pKa = 10.76PGDD62 pKa = 3.7NPEE65 pKa = 4.21GVPTDD70 pKa = 3.68EE71 pKa = 4.4EE72 pKa = 4.91LIGALEE78 pKa = 3.84EE79 pKa = 4.61LEE81 pKa = 4.18NGGAGEE87 pKa = 4.21GTSRR91 pKa = 11.84SEE93 pKa = 4.09CSLKK97 pKa = 10.9YY98 pKa = 10.87SLDD101 pKa = 3.45TLGDD105 pKa = 3.73VLSEE109 pKa = 4.07ALCVLSS115 pKa = 4.57

Molecular weight: 12.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|X2G9U7|X2G9U7_9VIRU Capsid protein OS=Rodent Torque teno virus 1 OX=1514664 PE=3 SV=1
MM1 pKa = 7.63AWRR4 pKa = 11.84FPRR7 pKa = 11.84RR8 pKa = 11.84TTWKK12 pKa = 9.66RR13 pKa = 11.84KK14 pKa = 5.77TWRR17 pKa = 11.84QPRR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84TYY24 pKa = 10.0RR25 pKa = 11.84RR26 pKa = 11.84RR27 pKa = 11.84AYY29 pKa = 10.18RR30 pKa = 11.84RR31 pKa = 11.84TRR33 pKa = 11.84RR34 pKa = 11.84TRR36 pKa = 11.84KK37 pKa = 7.06WRR39 pKa = 11.84RR40 pKa = 11.84GRR42 pKa = 11.84RR43 pKa = 11.84NLKK46 pKa = 9.82VRR48 pKa = 11.84VLTEE52 pKa = 3.35IQPRR56 pKa = 11.84YY57 pKa = 7.46TRR59 pKa = 11.84RR60 pKa = 11.84CVIRR64 pKa = 11.84GIMCPLIVGQPNADD78 pKa = 3.34GSPSKK83 pKa = 10.8QNWEE87 pKa = 3.96LRR89 pKa = 11.84QGGIFAYY96 pKa = 9.74KK97 pKa = 10.08HH98 pKa = 6.53DD99 pKa = 5.29GSDD102 pKa = 2.78LWMGTWSMGMVSLSILYY119 pKa = 10.29GEE121 pKa = 4.23HH122 pKa = 4.63QAYY125 pKa = 9.52RR126 pKa = 11.84NRR128 pKa = 11.84WSVSNCGFDD137 pKa = 3.15MVEE140 pKa = 3.87YY141 pKa = 10.35RR142 pKa = 11.84GTTIYY147 pKa = 10.8LEE149 pKa = 4.08QHH151 pKa = 5.0STMDD155 pKa = 3.65YY156 pKa = 10.57IVFFDD161 pKa = 3.66EE162 pKa = 4.72EE163 pKa = 4.41YY164 pKa = 11.15RR165 pKa = 11.84DD166 pKa = 3.53ITSFAAQASLHH177 pKa = 6.2PLVLMTHH184 pKa = 7.4PKK186 pKa = 9.56TILIKK191 pKa = 9.96SRR193 pKa = 11.84EE194 pKa = 3.98RR195 pKa = 11.84AGPRR199 pKa = 11.84RR200 pKa = 11.84ARR202 pKa = 11.84KK203 pKa = 9.73VFIPRR208 pKa = 11.84PSWWDD213 pKa = 3.44SGWKK217 pKa = 9.58FSKK220 pKa = 10.53DD221 pKa = 3.46VCNKK225 pKa = 10.26GLFVWYY231 pKa = 9.85ISAIDD236 pKa = 4.11MEE238 pKa = 4.98HH239 pKa = 6.9PWMKK243 pKa = 10.57AYY245 pKa = 10.44VGNKK249 pKa = 8.57TDD251 pKa = 4.03FQNLMWWRR259 pKa = 11.84NNKK262 pKa = 8.4WKK264 pKa = 10.54EE265 pKa = 3.96DD266 pKa = 2.96FDD268 pKa = 4.27TYY270 pKa = 11.55VRR272 pKa = 11.84TTAQMLQTSKK282 pKa = 11.22NDD284 pKa = 3.31NNYY287 pKa = 8.53KK288 pKa = 9.64TEE290 pKa = 4.06TATGPFMLSIKK301 pKa = 10.09DD302 pKa = 3.62RR303 pKa = 11.84NRR305 pKa = 11.84ATVNQQFTWFYY316 pKa = 10.06KK317 pKa = 10.54SYY319 pKa = 9.11WHH321 pKa = 7.09WGGNNLTIKK330 pKa = 10.21KK331 pKa = 9.35VCNPNMDD338 pKa = 3.43VPITT342 pKa = 3.68

Molecular weight: 41.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

685

83

342

171.3

20.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.65 ± 0.927

2.19 ± 0.595

5.109 ± 0.82

6.277 ± 2.202

3.358 ± 0.451

5.985 ± 0.758

2.336 ± 0.424

4.088 ± 0.917

7.591 ± 1.039

6.861 ± 1.593

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.212 ± 0.574

4.964 ± 0.378

4.818 ± 0.398

4.818 ± 0.916

8.905 ± 2.127

7.153 ± 1.907

7.153 ± 0.699

4.38 ± 0.555

4.234 ± 0.839

2.92 ± 1.067
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski