Lentisphaera araneosa HTCC2155

Taxonomy: cellular organisms; Bacteria; PVC group; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera; Lentisphaera araneosa

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4982 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A6DGE7|A6DGE7_9BACT N-acetylgalactosamine 6-sulfatase (GALNS) OS=Lentisphaera araneosa HTCC2155 OX=313628 GN=LNTAR_22779 PE=3 SV=1
MM1 pKa = 7.2YY2 pKa = 9.88GANGKK7 pKa = 9.59DD8 pKa = 3.59DD9 pKa = 3.95SLHH12 pKa = 6.86AGLEE16 pKa = 4.32SPTTYY21 pKa = 10.74GGAGFTNKK29 pKa = 9.81SATWTWVGEE38 pKa = 3.9AAAARR43 pKa = 11.84VTVEE47 pKa = 4.18VPSSGIHH54 pKa = 6.74TIRR57 pKa = 11.84IWQRR61 pKa = 11.84EE62 pKa = 4.16DD63 pKa = 2.76GTRR66 pKa = 11.84LDD68 pKa = 4.9KK69 pKa = 10.98IIVSNISSYY78 pKa = 10.68TPDD81 pKa = 4.49GIGPPEE87 pKa = 4.18SPMNIISTEE96 pKa = 3.88SSVDD100 pKa = 3.36EE101 pKa = 4.02NSIVSNEE108 pKa = 3.84NSSDD112 pKa = 3.62DD113 pKa = 4.45SSSQSYY119 pKa = 10.31GSSSILTGTNSIYY132 pKa = 10.86EE133 pKa = 4.38DD134 pKa = 4.04LNSTLLVLNGSNFILEE150 pKa = 4.15IVTAEE155 pKa = 3.74GSYY158 pKa = 11.07LFGCTYY164 pKa = 11.02GDD166 pKa = 3.68SFEE169 pKa = 4.34STIIDD174 pKa = 4.36DD175 pKa = 3.78FTFDD179 pKa = 4.28IIYY182 pKa = 10.1SDD184 pKa = 3.19SSEE187 pKa = 3.81IEE189 pKa = 4.06EE190 pKa = 5.07FIHH193 pKa = 7.35SLFDD197 pKa = 3.58EE198 pKa = 4.49NEE200 pKa = 4.05IIDD203 pKa = 3.96ILLVEE208 pKa = 4.52

Molecular weight: 22.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A6DU75|A6DU75_9BACT N-acetylgalactosamine 6-sulfate sulfatase (GALNS) OS=Lentisphaera araneosa HTCC2155 OX=313628 GN=LNTAR_09921 PE=4 SV=1
MM1 pKa = 7.6GNLRR5 pKa = 11.84KK6 pKa = 9.66KK7 pKa = 10.29RR8 pKa = 11.84RR9 pKa = 11.84SKK11 pKa = 9.72IAKK14 pKa = 8.79HH15 pKa = 5.52KK16 pKa = 10.17RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 8.31QSRR22 pKa = 11.84KK23 pKa = 8.82NRR25 pKa = 11.84HH26 pKa = 4.05KK27 pKa = 9.8TKK29 pKa = 10.85

Molecular weight: 3.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4982

0

4982

1741385

20

4990

349.5

39.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.965 ± 0.029

1.178 ± 0.012

5.861 ± 0.031

6.66 ± 0.032

4.597 ± 0.021

6.335 ± 0.036

2.322 ± 0.017

6.646 ± 0.031

7.937 ± 0.037

9.813 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.46 ± 0.017

4.943 ± 0.024

3.934 ± 0.023

3.848 ± 0.02

4.252 ± 0.024

6.974 ± 0.025

4.832 ± 0.029

5.493 ± 0.026

1.332 ± 0.013

3.616 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski