Amino acid dipepetide frequency for Rhizoctonia solani flexivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
11.22AlaAla: 11.22 ± 0.0
2.014AlaCys: 2.014 ± 0.0
4.891AlaAsp: 4.891 ± 0.0
4.891AlaGlu: 4.891 ± 0.0
3.165AlaPhe: 3.165 ± 0.0
6.329AlaGly: 6.329 ± 0.0
4.315AlaHis: 4.315 ± 0.0
4.315AlaIle: 4.315 ± 0.0
4.891AlaLys: 4.891 ± 0.0
11.795AlaLeu: 11.795 ± 0.0
1.726AlaMet: 1.726 ± 0.0
2.301AlaAsn: 2.301 ± 0.0
11.22AlaPro: 11.22 ± 0.0
1.726AlaGln: 1.726 ± 0.0
5.754AlaArg: 5.754 ± 0.0
6.041AlaSer: 6.041 ± 0.0
9.206AlaThr: 9.206 ± 0.0
7.48AlaVal: 7.48 ± 0.0
2.301AlaTrp: 2.301 ± 0.0
1.151AlaTyr: 1.151 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
2.589CysAla: 2.589 ± 0.0
0.288CysCys: 0.288 ± 0.0
0.575CysAsp: 0.575 ± 0.0
0.575CysGlu: 0.575 ± 0.0
0.863CysPhe: 0.863 ± 0.0
1.438CysGly: 1.438 ± 0.0
0.288CysHis: 0.288 ± 0.0
0.288CysIle: 0.288 ± 0.0
0.0CysLys: 0.0 ± 0.0
3.165CysLeu: 3.165 ± 0.0
0.288CysMet: 0.288 ± 0.0
0.575CysAsn: 0.575 ± 0.0
2.301CysPro: 2.301 ± 0.0
0.288CysGln: 0.288 ± 0.0
0.863CysArg: 0.863 ± 0.0
1.438CysSer: 1.438 ± 0.0
1.438CysThr: 1.438 ± 0.0
0.575CysVal: 0.575 ± 0.0
0.575CysTrp: 0.575 ± 0.0
0.575CysTyr: 0.575 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
6.617AspAla: 6.617 ± 0.0
0.288AspCys: 0.288 ± 0.0
2.589AspAsp: 2.589 ± 0.0
3.74AspGlu: 3.74 ± 0.0
1.151AspPhe: 1.151 ± 0.0
2.877AspGly: 2.877 ± 0.0
1.438AspHis: 1.438 ± 0.0
1.726AspIle: 1.726 ± 0.0
0.863AspLys: 0.863 ± 0.0
5.466AspLeu: 5.466 ± 0.0
1.438AspMet: 1.438 ± 0.0
1.726AspAsn: 1.726 ± 0.0
6.329AspPro: 6.329 ± 0.0
1.151AspGln: 1.151 ± 0.0
1.726AspArg: 1.726 ± 0.0
3.165AspSer: 3.165 ± 0.0
2.589AspThr: 2.589 ± 0.0
3.165AspVal: 3.165 ± 0.0
1.438AspTrp: 1.438 ± 0.0
2.014AspTyr: 2.014 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.028GluAla: 4.028 ± 0.0
0.288GluCys: 0.288 ± 0.0
0.863GluAsp: 0.863 ± 0.0
2.301GluGlu: 2.301 ± 0.0
2.877GluPhe: 2.877 ± 0.0
1.438GluGly: 1.438 ± 0.0
2.301GluHis: 2.301 ± 0.0
1.438GluIle: 1.438 ± 0.0
1.151GluLys: 1.151 ± 0.0
3.165GluLeu: 3.165 ± 0.0
0.863GluMet: 0.863 ± 0.0
1.151GluAsn: 1.151 ± 0.0
4.028GluPro: 4.028 ± 0.0
1.151GluGln: 1.151 ± 0.0
2.301GluArg: 2.301 ± 0.0
3.452GluSer: 3.452 ± 0.0
2.014GluThr: 2.014 ± 0.0
2.877GluVal: 2.877 ± 0.0
0.863GluTrp: 0.863 ± 0.0
1.438GluTyr: 1.438 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
4.315PheAla: 4.315 ± 0.0
1.151PheCys: 1.151 ± 0.0
3.165PheAsp: 3.165 ± 0.0
0.863PheGlu: 0.863 ± 0.0
0.288PhePhe: 0.288 ± 0.0
4.028PheGly: 4.028 ± 0.0
1.151PheHis: 1.151 ± 0.0
2.014PheIle: 2.014 ± 0.0
0.288PheLys: 0.288 ± 0.0
2.589PheLeu: 2.589 ± 0.0
0.288PheMet: 0.288 ± 0.0
0.863PheAsn: 0.863 ± 0.0
3.452PhePro: 3.452 ± 0.0
1.151PheGln: 1.151 ± 0.0
1.726PheArg: 1.726 ± 0.0
3.165PheSer: 3.165 ± 0.0
2.014PheThr: 2.014 ± 0.0
1.438PheVal: 1.438 ± 0.0
1.151PheTrp: 1.151 ± 0.0
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
5.466GlyAla: 5.466 ± 0.0
2.301GlyCys: 2.301 ± 0.0
3.74GlyAsp: 3.74 ± 0.0
1.726GlyGlu: 1.726 ± 0.0
3.74GlyPhe: 3.74 ± 0.0
4.315GlyGly: 4.315 ± 0.0
2.301GlyHis: 2.301 ± 0.0
1.726GlyIle: 1.726 ± 0.0
2.301GlyLys: 2.301 ± 0.0
5.754GlyLeu: 5.754 ± 0.0
1.726GlyMet: 1.726 ± 0.0
1.151GlyAsn: 1.151 ± 0.0
6.041GlyPro: 6.041 ± 0.0
2.877GlyGln: 2.877 ± 0.0
4.603GlyArg: 4.603 ± 0.0
3.452GlySer: 3.452 ± 0.0
3.165GlyThr: 3.165 ± 0.0
2.301GlyVal: 2.301 ± 0.0
2.301GlyTrp: 2.301 ± 0.0
1.151GlyTyr: 1.151 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
4.315HisAla: 4.315 ± 0.0
1.151HisCys: 1.151 ± 0.0
2.014HisAsp: 2.014 ± 0.0
0.575HisGlu: 0.575 ± 0.0
1.151HisPhe: 1.151 ± 0.0
2.589HisGly: 2.589 ± 0.0
0.575HisHis: 0.575 ± 0.0
1.438HisIle: 1.438 ± 0.0
1.438HisLys: 1.438 ± 0.0
2.301HisLeu: 2.301 ± 0.0
0.575HisMet: 0.575 ± 0.0
0.863HisAsn: 0.863 ± 0.0
4.315HisPro: 4.315 ± 0.0
0.288HisGln: 0.288 ± 0.0
2.301HisArg: 2.301 ± 0.0
1.438HisSer: 1.438 ± 0.0
2.589HisThr: 2.589 ± 0.0
3.74HisVal: 3.74 ± 0.0
0.863HisTrp: 0.863 ± 0.0
1.151HisTyr: 1.151 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.74IleAla: 3.74 ± 0.0
1.151IleCys: 1.151 ± 0.0
1.438IleAsp: 1.438 ± 0.0
0.575IleGlu: 0.575 ± 0.0
0.575IlePhe: 0.575 ± 0.0
1.438IleGly: 1.438 ± 0.0
2.014IleHis: 2.014 ± 0.0
2.014IleIle: 2.014 ± 0.0
2.014IleLys: 2.014 ± 0.0
3.74IleLeu: 3.74 ± 0.0
0.288IleMet: 0.288 ± 0.0
2.014IleAsn: 2.014 ± 0.0
6.041IlePro: 6.041 ± 0.0
1.151IleGln: 1.151 ± 0.0
2.014IleArg: 2.014 ± 0.0
2.014IleSer: 2.014 ± 0.0
4.315IleThr: 4.315 ± 0.0
2.014IleVal: 2.014 ± 0.0
0.863IleTrp: 0.863 ± 0.0
0.288IleTyr: 0.288 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
1.438LysAla: 1.438 ± 0.0
0.575LysCys: 0.575 ± 0.0
1.151LysAsp: 1.151 ± 0.0
0.288LysGlu: 0.288 ± 0.0
0.863LysPhe: 0.863 ± 0.0
1.151LysGly: 1.151 ± 0.0
1.438LysHis: 1.438 ± 0.0
1.438LysIle: 1.438 ± 0.0
1.151LysLys: 1.151 ± 0.0
4.315LysLeu: 4.315 ± 0.0
1.151LysMet: 1.151 ± 0.0
0.575LysAsn: 0.575 ± 0.0
3.165LysPro: 3.165 ± 0.0
0.863LysGln: 0.863 ± 0.0
2.877LysArg: 2.877 ± 0.0
1.438LysSer: 1.438 ± 0.0
0.863LysThr: 0.863 ± 0.0
1.151LysVal: 1.151 ± 0.0
0.575LysTrp: 0.575 ± 0.0
0.288LysTyr: 0.288 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
10.644LeuAla: 10.644 ± 0.0
2.014LeuCys: 2.014 ± 0.0
4.315LeuAsp: 4.315 ± 0.0
1.726LeuGlu: 1.726 ± 0.0
3.452LeuPhe: 3.452 ± 0.0
5.178LeuGly: 5.178 ± 0.0
2.014LeuHis: 2.014 ± 0.0
2.301LeuIle: 2.301 ± 0.0
2.589LeuLys: 2.589 ± 0.0
7.192LeuLeu: 7.192 ± 0.0
1.726LeuMet: 1.726 ± 0.0
4.315LeuAsn: 4.315 ± 0.0
8.343LeuPro: 8.343 ± 0.0
3.74LeuGln: 3.74 ± 0.0
6.617LeuArg: 6.617 ± 0.0
6.617LeuSer: 6.617 ± 0.0
3.452LeuThr: 3.452 ± 0.0
3.74LeuVal: 3.74 ± 0.0
0.863LeuTrp: 0.863 ± 0.0
3.452LeuTyr: 3.452 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.589MetAla: 2.589 ± 0.0
0.863MetCys: 0.863 ± 0.0
0.575MetAsp: 0.575 ± 0.0
1.151MetGlu: 1.151 ± 0.0
0.288MetPhe: 0.288 ± 0.0
0.863MetGly: 0.863 ± 0.0
0.0MetHis: 0.0 ± 0.0
0.575MetIle: 0.575 ± 0.0
0.0MetLys: 0.0 ± 0.0
1.151MetLeu: 1.151 ± 0.0
0.575MetMet: 0.575 ± 0.0
0.575MetAsn: 0.575 ± 0.0
0.863MetPro: 0.863 ± 0.0
1.151MetGln: 1.151 ± 0.0
2.301MetArg: 2.301 ± 0.0
1.151MetSer: 1.151 ± 0.0
0.288MetThr: 0.288 ± 0.0
0.575MetVal: 0.575 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.863MetTyr: 0.863 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.165AsnAla: 3.165 ± 0.0
0.863AsnCys: 0.863 ± 0.0
1.726AsnAsp: 1.726 ± 0.0
1.438AsnGlu: 1.438 ± 0.0
2.301AsnPhe: 2.301 ± 0.0
1.726AsnGly: 1.726 ± 0.0
0.288AsnHis: 0.288 ± 0.0
1.438AsnIle: 1.438 ± 0.0
0.575AsnLys: 0.575 ± 0.0
2.014AsnLeu: 2.014 ± 0.0
0.288AsnMet: 0.288 ± 0.0
0.575AsnAsn: 0.575 ± 0.0
4.603AsnPro: 4.603 ± 0.0
1.151AsnGln: 1.151 ± 0.0
2.301AsnArg: 2.301 ± 0.0
2.014AsnSer: 2.014 ± 0.0
1.726AsnThr: 1.726 ± 0.0
0.863AsnVal: 0.863 ± 0.0
0.575AsnTrp: 0.575 ± 0.0
0.863AsnTyr: 0.863 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
11.22ProAla: 11.22 ± 0.0
2.014ProCys: 2.014 ± 0.0
5.178ProAsp: 5.178 ± 0.0
6.041ProGlu: 6.041 ± 0.0
2.589ProPhe: 2.589 ± 0.0
11.22ProGly: 11.22 ± 0.0
3.74ProHis: 3.74 ± 0.0
7.48ProIle: 7.48 ± 0.0
2.014ProLys: 2.014 ± 0.0
7.192ProLeu: 7.192 ± 0.0
0.288ProMet: 0.288 ± 0.0
3.452ProAsn: 3.452 ± 0.0
10.644ProPro: 10.644 ± 0.0
2.301ProGln: 2.301 ± 0.0
8.055ProArg: 8.055 ± 0.0
5.754ProSer: 5.754 ± 0.0
6.617ProThr: 6.617 ± 0.0
9.781ProVal: 9.781 ± 0.0
0.288ProTrp: 0.288 ± 0.0
2.301ProTyr: 2.301 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
3.452GlnAla: 3.452 ± 0.0
0.575GlnCys: 0.575 ± 0.0
0.863GlnAsp: 0.863 ± 0.0
2.014GlnGlu: 2.014 ± 0.0
2.301GlnPhe: 2.301 ± 0.0
1.151GlnGly: 1.151 ± 0.0
0.575GlnHis: 0.575 ± 0.0
2.014GlnIle: 2.014 ± 0.0
0.288GlnLys: 0.288 ± 0.0
3.452GlnLeu: 3.452 ± 0.0
1.151GlnMet: 1.151 ± 0.0
0.0GlnAsn: 0.0 ± 0.0
4.028GlnPro: 4.028 ± 0.0
0.863GlnGln: 0.863 ± 0.0
2.301GlnArg: 2.301 ± 0.0
3.165GlnSer: 3.165 ± 0.0
1.151GlnThr: 1.151 ± 0.0
1.151GlnVal: 1.151 ± 0.0
0.288GlnTrp: 0.288 ± 0.0
0.863GlnTyr: 0.863 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
6.904ArgAla: 6.904 ± 0.0
0.863ArgCys: 0.863 ± 0.0
5.178ArgAsp: 5.178 ± 0.0
3.165ArgGlu: 3.165 ± 0.0
2.014ArgPhe: 2.014 ± 0.0
3.452ArgGly: 3.452 ± 0.0
2.589ArgHis: 2.589 ± 0.0
2.301ArgIle: 2.301 ± 0.0
2.589ArgLys: 2.589 ± 0.0
4.891ArgLeu: 4.891 ± 0.0
0.863ArgMet: 0.863 ± 0.0
3.165ArgAsn: 3.165 ± 0.0
5.178ArgPro: 5.178 ± 0.0
2.014ArgGln: 2.014 ± 0.0
6.904ArgArg: 6.904 ± 0.0
5.466ArgSer: 5.466 ± 0.0
3.74ArgThr: 3.74 ± 0.0
4.891ArgVal: 4.891 ± 0.0
1.726ArgTrp: 1.726 ± 0.0
2.589ArgTyr: 2.589 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
6.329SerAla: 6.329 ± 0.0
0.575SerCys: 0.575 ± 0.0
4.028SerAsp: 4.028 ± 0.0
3.165SerGlu: 3.165 ± 0.0
2.014SerPhe: 2.014 ± 0.0
4.891SerGly: 4.891 ± 0.0
4.028SerHis: 4.028 ± 0.0
2.301SerIle: 2.301 ± 0.0
0.863SerLys: 0.863 ± 0.0
3.74SerLeu: 3.74 ± 0.0
0.863SerMet: 0.863 ± 0.0
1.438SerAsn: 1.438 ± 0.0
6.617SerPro: 6.617 ± 0.0
2.589SerGln: 2.589 ± 0.0
4.028SerArg: 4.028 ± 0.0
6.329SerSer: 6.329 ± 0.0
3.74SerThr: 3.74 ± 0.0
6.041SerVal: 6.041 ± 0.0
2.301SerTrp: 2.301 ± 0.0
2.589SerTyr: 2.589 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
7.192ThrAla: 7.192 ± 0.0
0.288ThrCys: 0.288 ± 0.0
3.165ThrAsp: 3.165 ± 0.0
2.301ThrGlu: 2.301 ± 0.0
1.726ThrPhe: 1.726 ± 0.0
2.301ThrGly: 2.301 ± 0.0
2.589ThrHis: 2.589 ± 0.0
0.863ThrIle: 0.863 ± 0.0
0.863ThrLys: 0.863 ± 0.0
5.178ThrLeu: 5.178 ± 0.0
0.863ThrMet: 0.863 ± 0.0
1.726ThrAsn: 1.726 ± 0.0
7.48ThrPro: 7.48 ± 0.0
1.438ThrGln: 1.438 ± 0.0
5.754ThrArg: 5.754 ± 0.0
4.603ThrSer: 4.603 ± 0.0
3.74ThrThr: 3.74 ± 0.0
4.603ThrVal: 4.603 ± 0.0
1.438ThrTrp: 1.438 ± 0.0
3.452ThrTyr: 3.452 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
8.631ValAla: 8.631 ± 0.0
1.151ValCys: 1.151 ± 0.0
3.74ValAsp: 3.74 ± 0.0
2.014ValGlu: 2.014 ± 0.0
0.863ValPhe: 0.863 ± 0.0
4.315ValGly: 4.315 ± 0.0
2.014ValHis: 2.014 ± 0.0
2.014ValIle: 2.014 ± 0.0
1.726ValLys: 1.726 ± 0.0
2.589ValLeu: 2.589 ± 0.0
0.575ValMet: 0.575 ± 0.0
2.589ValAsn: 2.589 ± 0.0
8.631ValPro: 8.631 ± 0.0
3.74ValGln: 3.74 ± 0.0
4.028ValArg: 4.028 ± 0.0
4.315ValSer: 4.315 ± 0.0
4.891ValThr: 4.891 ± 0.0
3.452ValVal: 3.452 ± 0.0
0.288ValTrp: 0.288 ± 0.0
1.726ValTyr: 1.726 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.863TrpAla: 0.863 ± 0.0
0.288TrpCys: 0.288 ± 0.0
0.575TrpAsp: 0.575 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
1.726TrpPhe: 1.726 ± 0.0
0.863TrpGly: 0.863 ± 0.0
1.151TrpHis: 1.151 ± 0.0
1.151TrpIle: 1.151 ± 0.0
1.151TrpLys: 1.151 ± 0.0
2.301TrpLeu: 2.301 ± 0.0
0.288TrpMet: 0.288 ± 0.0
0.288TrpAsn: 0.288 ± 0.0
2.877TrpPro: 2.877 ± 0.0
0.288TrpGln: 0.288 ± 0.0
1.151TrpArg: 1.151 ± 0.0
0.863TrpSer: 0.863 ± 0.0
0.863TrpThr: 0.863 ± 0.0
1.151TrpVal: 1.151 ± 0.0
0.288TrpTrp: 0.288 ± 0.0
0.863TrpTyr: 0.863 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.014TyrAla: 2.014 ± 0.0
0.288TyrCys: 0.288 ± 0.0
1.726TyrAsp: 1.726 ± 0.0
1.438TyrGlu: 1.438 ± 0.0
1.151TyrPhe: 1.151 ± 0.0
0.575TyrGly: 0.575 ± 0.0
0.863TyrHis: 0.863 ± 0.0
0.863TyrIle: 0.863 ± 0.0
0.0TyrLys: 0.0 ± 0.0
2.301TyrLeu: 2.301 ± 0.0
0.288TyrMet: 0.288 ± 0.0
1.151TyrAsn: 1.151 ± 0.0
2.014TyrPro: 2.014 ± 0.0
1.726TyrGln: 1.726 ± 0.0
2.877TyrArg: 2.877 ± 0.0
2.877TyrSer: 2.877 ± 0.0
3.165TyrThr: 3.165 ± 0.0
2.301TyrVal: 2.301 ± 0.0
0.0TyrTrp: 0.0 ± 0.0
2.014TyrTyr: 2.014 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (3477 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski