Candidatus Xenolissoclinum pacificiensis L6

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Candidatus Xenolissoclinum; Candidatus Xenolissoclinum pacificiensis

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 956 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W2V1W7|W2V1W7_9RICK Uncharacterized protein OS=Candidatus Xenolissoclinum pacificiensis L6 OX=1401685 GN=P857_358 PE=4 SV=1
MM1 pKa = 7.66IEE3 pKa = 3.72ANYY6 pKa = 10.16FFTQFTNFLDD16 pKa = 4.21EE17 pKa = 5.3DD18 pKa = 4.47PEE20 pKa = 4.51TMKK23 pKa = 10.34IEE25 pKa = 3.96YY26 pKa = 10.25SILDD30 pKa = 3.39NVTNYY35 pKa = 8.96FWSFVAKK42 pKa = 10.17VDD44 pKa = 4.51PEE46 pKa = 4.14KK47 pKa = 10.94CSQDD51 pKa = 3.5KK52 pKa = 11.18LNEE55 pKa = 3.89SCAFFPIWLMSDD67 pKa = 3.58DD68 pKa = 4.25FFF70 pKa = 6.98

Molecular weight: 8.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W2UZV6|W2UZV6_9RICK Phosphatidylserine decarboxylase proenzyme OS=Candidatus Xenolissoclinum pacificiensis L6 OX=1401685 GN=psd PE=4 SV=1
MM1 pKa = 7.61GKK3 pKa = 10.25LKK5 pKa = 9.96TKK7 pKa = 10.45SGLKK11 pKa = 10.34GRR13 pKa = 11.84FKK15 pKa = 10.24VTATGKK21 pKa = 10.57VMATQSGKK29 pKa = 9.71RR30 pKa = 11.84HH31 pKa = 5.65NLRR34 pKa = 11.84KK35 pKa = 9.72RR36 pKa = 11.84SPRR39 pKa = 11.84SSRR42 pKa = 11.84GQKK45 pKa = 10.13GFVRR49 pKa = 11.84LGAHH53 pKa = 5.62GTTLIKK59 pKa = 10.48YY60 pKa = 8.22LKK62 pKa = 9.92NNRR65 pKa = 11.84GG66 pKa = 3.21

Molecular weight: 7.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

956

0

956

269146

37

3035

281.5

32.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.597 ± 0.068

1.466 ± 0.034

5.741 ± 0.07

5.491 ± 0.07

4.608 ± 0.065

5.117 ± 0.097

2.321 ± 0.045

9.774 ± 0.104

7.105 ± 0.084

9.423 ± 0.083

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.698 ± 0.042

6.264 ± 0.085

2.999 ± 0.045

3.652 ± 0.073

3.845 ± 0.059

8.087 ± 0.07

5.043 ± 0.076

6.697 ± 0.086

0.626 ± 0.023

4.446 ± 0.064
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski