Paroedura picta

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Lepidosauria; Squamata;

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 26691 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A402G689|A0A402G689_9SAUR Plexin_cytopl domain-containing protein (Fragment) OS=Paroedura picta OX=143630 GN=parPi_0031056 PE=4 SV=1
CC1 pKa = 7.16SLAGSPDD8 pKa = 3.06VRR10 pKa = 11.84EE11 pKa = 4.19WYY13 pKa = 9.96FAIQSICGFYY23 pKa = 10.08QFCSSDD29 pKa = 3.36WEE31 pKa = 4.34DD32 pKa = 3.43VSFDD36 pKa = 4.37LLADD40 pKa = 3.51QSNDD44 pKa = 2.79SVRR47 pKa = 11.84RR48 pKa = 11.84YY49 pKa = 9.84IEE51 pKa = 4.07EE52 pKa = 4.74CLDD55 pKa = 3.27SDD57 pKa = 4.67QNIEE61 pKa = 4.38KK62 pKa = 9.92EE63 pKa = 4.18DD64 pKa = 3.82SNSRR68 pKa = 11.84EE69 pKa = 3.9SMSPIEE75 pKa = 4.02

Molecular weight: 8.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A402F0R4|A0A402F0R4_9SAUR Uncharacterized protein OS=Paroedura picta OX=143630 GN=parPi_0011001 PE=4 SV=1
MM1 pKa = 7.82KK2 pKa = 10.29DD3 pKa = 3.36GPGQAARR10 pKa = 11.84GALLRR15 pKa = 11.84GAGRR19 pKa = 11.84GAAGGSGSAPRR30 pKa = 11.84LAGVPLHH37 pKa = 6.08EE38 pKa = 4.87SRR40 pKa = 11.84RR41 pKa = 11.84GPKK44 pKa = 9.72RR45 pKa = 11.84SGGGGGGWLRR55 pKa = 11.84SGQQNLPAWAAPSALRR71 pKa = 11.84LHH73 pKa = 6.43TAPGSSRR80 pKa = 11.84ARR82 pKa = 11.84RR83 pKa = 11.84GGGAAGSARR92 pKa = 11.84VGRR95 pKa = 11.84APEE98 pKa = 3.83RR99 pKa = 11.84TGGCRR104 pKa = 11.84RR105 pKa = 11.84APLMPPAGLRR115 pKa = 11.84GPSAAAPTRR124 pKa = 11.84PSRR127 pKa = 11.84AAPRR131 pKa = 11.84LHH133 pKa = 6.36GPARR137 pKa = 11.84EE138 pKa = 3.77RR139 pKa = 11.84RR140 pKa = 11.84RR141 pKa = 11.84RR142 pKa = 11.84RR143 pKa = 11.84QASSLASAAAPLALALARR161 pKa = 11.84WAPPLLPRR169 pKa = 11.84ASQSPARR176 pKa = 11.84SLARR180 pKa = 11.84SQRR183 pKa = 11.84TLPRR187 pKa = 11.84STPRR191 pKa = 11.84AA192 pKa = 3.5

Molecular weight: 19.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

26691

0

26691

11387269

30

32754

426.6

47.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.289 ± 0.018

2.209 ± 0.012

4.813 ± 0.012

7.293 ± 0.02

3.656 ± 0.01

6.562 ± 0.021

2.526 ± 0.008

4.43 ± 0.014

5.938 ± 0.023

9.839 ± 0.026

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.262 ± 0.007

3.615 ± 0.011

5.923 ± 0.024

4.585 ± 0.015

5.957 ± 0.017

8.066 ± 0.022

5.079 ± 0.014

6.019 ± 0.015

1.29 ± 0.007

2.647 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski