Zhaonella formicivorans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Thermoanaerobacterales; Zhaonellaceae; Zhaonella

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4397 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R5JBR7|A0A4R5JBR7_9FIRM Putative methylaconitate Delta-isomerase PrpF (Fragment) OS=Zhaonella formicivorans OX=2528593 GN=EYS13_21700 PE=3 SV=1
LL1 pKa = 7.2NLVEE5 pKa = 5.86KK6 pKa = 10.29ICQDD10 pKa = 3.1SQLIIDD16 pKa = 4.13IFVNYY21 pKa = 10.1DD22 pKa = 3.47CDD24 pKa = 3.49VDD26 pKa = 3.7APNIFEE32 pKa = 4.16RR33 pKa = 5.09

Molecular weight: 3.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R5JDJ7|A0A4R5JDJ7_9FIRM Pyridoxal-phosphate dependent enzyme (Fragment) OS=Zhaonella formicivorans OX=2528593 GN=EYS13_18175 PE=4 SV=1
MM1 pKa = 7.75RR2 pKa = 11.84PFGRR6 pKa = 11.84PVARR10 pKa = 11.84QPARR14 pKa = 11.84APVRR18 pKa = 11.84PVAVRR23 pKa = 11.84AQPVRR28 pKa = 11.84PVVRR32 pKa = 11.84QPVPRR37 pKa = 11.84PLPVYY42 pKa = 9.04PVRR45 pKa = 11.84PAVRR49 pKa = 11.84RR50 pKa = 11.84PAPIAPVVRR59 pKa = 11.84VAPAPQRR66 pKa = 11.84RR67 pKa = 3.57

Molecular weight: 7.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4397

0

4397

1025325

11

2808

233.2

25.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.625 ± 0.042

1.191 ± 0.018

4.481 ± 0.029

7.096 ± 0.047

3.919 ± 0.028

7.645 ± 0.035

1.832 ± 0.017

7.008 ± 0.037

6.515 ± 0.035

10.713 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.449 ± 0.019

3.867 ± 0.027

4.156 ± 0.026

3.648 ± 0.025

4.879 ± 0.037

5.364 ± 0.033

4.958 ± 0.029

7.549 ± 0.038

0.964 ± 0.015

3.14 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski