Oenococcus kitaharae DSM 17330

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Oenococcus; Oenococcus kitaharae

Average proteome isoelectric point is 6.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1818 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G9WFS3|G9WFS3_9LACO Isopentenyl-diphosphate delta-isomerase OS=Oenococcus kitaharae DSM 17330 OX=1045004 GN=fni PE=3 SV=1
MM1 pKa = 8.04DD2 pKa = 5.45FEE4 pKa = 5.6DD5 pKa = 4.68LQALTDD11 pKa = 4.2LDD13 pKa = 4.03EE14 pKa = 6.09ADD16 pKa = 4.46LVVALNHH23 pKa = 5.4LHH25 pKa = 7.62DD26 pKa = 5.63RR27 pKa = 11.84GLLFNGYY34 pKa = 8.87IDD36 pKa = 4.27EE37 pKa = 4.4EE38 pKa = 4.37TGEE41 pKa = 4.43VVTDD45 pKa = 4.46DD46 pKa = 3.61IGYY49 pKa = 10.04LYY51 pKa = 11.1KK52 pKa = 10.79LANN55 pKa = 3.63

Molecular weight: 6.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G9WJR9|G9WJR9_9LACO Peptide chain release factor 3 OS=Oenococcus kitaharae DSM 17330 OX=1045004 GN=prfC PE=3 SV=1
MM1 pKa = 7.88PKK3 pKa = 9.48MKK5 pKa = 10.02TSRR8 pKa = 11.84ASAKK12 pKa = 9.94RR13 pKa = 11.84FKK15 pKa = 9.66KK16 pKa = 8.39TASGGFKK23 pKa = 10.21SGQAFTSHH31 pKa = 6.83RR32 pKa = 11.84FHH34 pKa = 7.48GKK36 pKa = 6.37TKK38 pKa = 9.57KK39 pKa = 9.41QRR41 pKa = 11.84RR42 pKa = 11.84QLRR45 pKa = 11.84GTAMMNRR52 pKa = 11.84INVKK56 pKa = 9.78RR57 pKa = 11.84YY58 pKa = 10.15AKK60 pKa = 10.44VLSNLL65 pKa = 3.51

Molecular weight: 7.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1818

0

1818

551158

50

1583

303.2

33.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.737 ± 0.062

0.33 ± 0.011

5.967 ± 0.06

4.786 ± 0.058

4.878 ± 0.054

6.481 ± 0.047

2.108 ± 0.027

7.359 ± 0.051

6.24 ± 0.056

10.279 ± 0.067

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.414 ± 0.026

4.675 ± 0.037

3.579 ± 0.032

4.886 ± 0.048

4.245 ± 0.041

6.621 ± 0.044

5.448 ± 0.039

6.5 ± 0.043

1.058 ± 0.023

3.407 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski