Halobacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ) (Bacteriovorax marinus)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Oligoflexia; Bacteriovoracales; Halobacteriovoraceae; Halobacteriovorax; Halobacteriovorax marinus

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3230 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E1X637|E1X637_HALMS Putative integral membrane zinc-metalloprotease OS=Halobacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ) OX=862908 GN=BMS_2595 PE=3 SV=1
MM1 pKa = 6.93MVWNFRR7 pKa = 11.84KK8 pKa = 10.14ALTLMSLLTLFAACNSAKK26 pKa = 10.39EE27 pKa = 4.25SVEE30 pKa = 4.08VVDD33 pKa = 3.34QGRR36 pKa = 11.84FNRR39 pKa = 11.84PPVSTPDD46 pKa = 4.09DD47 pKa = 3.83PTNDD51 pKa = 4.61DD52 pKa = 3.23ISLVNSLVAITRR64 pKa = 11.84EE65 pKa = 3.72RR66 pKa = 11.84LAPSDD71 pKa = 3.37QAIITFTARR80 pKa = 11.84DD81 pKa = 3.6SDD83 pKa = 3.66GVAINEE89 pKa = 4.36GGLDD93 pKa = 3.31VDD95 pKa = 5.19FSLVGDD101 pKa = 4.2GTSTGTFSATVDD113 pKa = 3.51TGNGVYY119 pKa = 10.42KK120 pKa = 10.25ATLTGIDD127 pKa = 3.73YY128 pKa = 10.8GSKK131 pKa = 8.14NTIRR135 pKa = 11.84VEE137 pKa = 4.27VEE139 pKa = 3.5GSTLIFVQPLQLQVISGDD157 pKa = 3.66YY158 pKa = 10.12YY159 pKa = 11.32RR160 pKa = 11.84EE161 pKa = 3.72IDD163 pKa = 4.32LDD165 pKa = 3.68NSTDD169 pKa = 3.27QDD171 pKa = 3.5EE172 pKa = 4.58FQIEE176 pKa = 4.5VNLTTSNFDD185 pKa = 3.31YY186 pKa = 11.4SNAEE190 pKa = 3.92SAGEE194 pKa = 4.02DD195 pKa = 2.92IRR197 pKa = 11.84FFDD200 pKa = 4.89EE201 pKa = 5.81DD202 pKa = 4.32FNEE205 pKa = 3.72QDD207 pKa = 3.06FWIEE211 pKa = 3.71NWDD214 pKa = 3.47NTGDD218 pKa = 3.57SKK220 pKa = 11.2IWVKK224 pKa = 10.2VQNSGTDD231 pKa = 3.17KK232 pKa = 11.25LLLVYY237 pKa = 10.48GNNSLASASSRR248 pKa = 11.84EE249 pKa = 4.14GVFSYY254 pKa = 10.94DD255 pKa = 3.44VNKK258 pKa = 10.53DD259 pKa = 2.72IYY261 pKa = 11.19YY262 pKa = 10.28EE263 pKa = 4.26LSQVAGPRR271 pKa = 11.84NYY273 pKa = 10.62GISSYY278 pKa = 10.81ISNNNVDD285 pKa = 3.62VLTNAGYY292 pKa = 10.54SSQTISPVAATTYY305 pKa = 10.88SNVISGLIGVDD316 pKa = 3.96GPISGRR322 pKa = 11.84FLTFNDD328 pKa = 4.17GADD331 pKa = 3.48TVAPLSFASTTLAYY345 pKa = 8.8PKK347 pKa = 10.64SRR349 pKa = 11.84GTDD352 pKa = 2.72DD353 pKa = 3.15WDD355 pKa = 3.38IYY357 pKa = 11.12NPNSVTANFTLSNYY371 pKa = 9.98DD372 pKa = 3.03SSGNLVNSNSYY383 pKa = 10.88SLAAGAEE390 pKa = 3.82LHH392 pKa = 6.68IDD394 pKa = 3.47YY395 pKa = 10.56DD396 pKa = 4.05VSKK399 pKa = 10.07MGLIEE404 pKa = 4.36SDD406 pKa = 4.0YY407 pKa = 10.84PLLGLYY413 pKa = 8.46YY414 pKa = 10.36QSNSNDD420 pKa = 3.18AVVMMKK426 pKa = 10.23PSTDD430 pKa = 3.27IIGPAATSGSIAIVEE445 pKa = 4.6DD446 pKa = 3.81GTNGTIYY453 pKa = 8.97YY454 pKa = 10.11TNGTTQAFSGDD465 pKa = 3.6KK466 pKa = 10.85GDD468 pKa = 4.63VIDD471 pKa = 4.64FSGGGSQNSATGLRR485 pKa = 11.84VIATKK490 pKa = 10.5GVSAVSQADD499 pKa = 3.42SDD501 pKa = 4.18GSEE504 pKa = 4.39SASFWPIEE512 pKa = 4.2EE513 pKa = 4.85LNNDD517 pKa = 4.1YY518 pKa = 10.56IVPASSQYY526 pKa = 11.0VVIICPEE533 pKa = 4.12TVNITLTDD541 pKa = 3.57PGGNDD546 pKa = 3.06NSGVCVPAGGNNPGVISFGSATVVSFQDD574 pKa = 3.54GTRR577 pKa = 11.84VSGDD581 pKa = 3.17ANFFMYY587 pKa = 10.61YY588 pKa = 9.97EE589 pKa = 4.4YY590 pKa = 10.88EE591 pKa = 5.4DD592 pKa = 3.99EE593 pKa = 5.85DD594 pKa = 3.9EE595 pKa = 4.6TNVVSWKK602 pKa = 8.11QARR605 pKa = 11.84SYY607 pKa = 11.46SPVPVSTSVGAEE619 pKa = 3.95QSWDD623 pKa = 3.21

Molecular weight: 66.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E1X1N0|E1X1N0_HALMS Putative integral membrane protein OS=Halobacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ) OX=862908 GN=BMS_0007 PE=4 SV=1
MM1 pKa = 7.83SKK3 pKa = 9.05RR4 pKa = 11.84TWQPKK9 pKa = 7.64RR10 pKa = 11.84KK11 pKa = 9.41KK12 pKa = 9.57RR13 pKa = 11.84LRR15 pKa = 11.84VHH17 pKa = 6.74GFLKK21 pKa = 10.62RR22 pKa = 11.84MSTAGGKK29 pKa = 9.27NVINARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.01GRR40 pKa = 11.84KK41 pKa = 8.14QLTVSTGSKK50 pKa = 10.24

Molecular weight: 5.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3230

0

3230

1060232

33

3358

328.2

37.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.818 ± 0.043

1.105 ± 0.017

5.543 ± 0.031

7.371 ± 0.052

5.237 ± 0.039

6.11 ± 0.045

1.882 ± 0.022

7.527 ± 0.04

8.229 ± 0.052

9.931 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.238 ± 0.023

5.282 ± 0.036

3.161 ± 0.025

2.986 ± 0.024

4.103 ± 0.029

8.003 ± 0.049

4.983 ± 0.039

5.956 ± 0.039

0.919 ± 0.014

3.615 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski