Clostridium phage susfortuna

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Guelinviridae; Susfortunavirus; Clostridium virus susfortuna

Average proteome isoelectric point is 5.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 28 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A385IRI6|A0A385IRI6_9CAUD Lactamase_B domain-containing protein OS=Clostridium phage susfortuna OX=2316154 GN=susfortuna_gp7 PE=4 SV=1
MM1 pKa = 7.42LKK3 pKa = 10.02VDD5 pKa = 3.28YY6 pKa = 10.23HH7 pKa = 7.67LNIEE11 pKa = 4.36VTQGDD16 pKa = 4.05SGCLFFGSNPYY27 pKa = 10.72SFIGSEE33 pKa = 4.17EE34 pKa = 3.88LRR36 pKa = 11.84LEE38 pKa = 4.32LFLGDD43 pKa = 4.61EE44 pKa = 4.88IIFSKK49 pKa = 10.53KK50 pKa = 10.39SNIVDD55 pKa = 3.45RR56 pKa = 11.84GLLFLEE62 pKa = 4.54LTEE65 pKa = 4.81QEE67 pKa = 4.55TLNLPKK73 pKa = 10.5GIYY76 pKa = 9.64DD77 pKa = 3.28YY78 pKa = 11.09RR79 pKa = 11.84VFMTYY84 pKa = 10.79DD85 pKa = 3.75DD86 pKa = 4.53NSMSEE91 pKa = 4.1YY92 pKa = 10.66VVNSKK97 pKa = 10.07QFTVKK102 pKa = 10.44GVV104 pKa = 3.01

Molecular weight: 11.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A385IRU9|A0A385IRU9_9CAUD Uncharacterized protein OS=Clostridium phage susfortuna OX=2316154 GN=susfortuna_gp1 PE=4 SV=1
MM1 pKa = 7.51IKK3 pKa = 10.63YY4 pKa = 10.02IILWILFNLFVLIFLYY20 pKa = 10.45DD21 pKa = 3.45RR22 pKa = 11.84KK23 pKa = 10.44VRR25 pKa = 11.84KK26 pKa = 9.23

Molecular weight: 3.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

28

0

28

5907

26

799

211.0

24.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.707 ± 0.432

1.422 ± 0.198

6.247 ± 0.247

8.38 ± 0.595

4.74 ± 0.454

6.789 ± 0.832

1.473 ± 0.126

7.991 ± 0.348

9.226 ± 0.602

8.228 ± 0.45

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.252 ± 0.174

7.686 ± 0.42

2.963 ± 0.451

3.149 ± 0.254

3.894 ± 0.286

5.113 ± 0.489

4.689 ± 0.38

5.604 ± 0.302

1.067 ± 0.183

5.383 ± 0.351
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski