Salmonella phage BP12C

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chivirus; Salmonella virus BP12C

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 76 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A140XFV9|A0A140XFV9_9CAUD Uncharacterized protein OS=Salmonella phage BP12C OX=1543203 GN=BP12C_04 PE=4 SV=1
MM1 pKa = 7.41AGLWFFVVTICGAVGADD18 pKa = 4.09NMAADD23 pKa = 3.87CHH25 pKa = 7.17DD26 pKa = 3.9YY27 pKa = 11.38VIDD30 pKa = 4.27AGISFDD36 pKa = 3.69DD37 pKa = 4.16CRR39 pKa = 11.84ASVAAYY45 pKa = 8.11PGRR48 pKa = 11.84IGLYY52 pKa = 8.3SVRR55 pKa = 11.84CDD57 pKa = 2.75RR58 pKa = 11.84GEE60 pKa = 3.97VVEE63 pKa = 4.71GGNHH67 pKa = 4.72EE68 pKa = 4.2

Molecular weight: 7.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A140XFV7|A0A140XFV7_9CAUD Uncharacterized protein OS=Salmonella phage BP12C OX=1543203 GN=BP12C_02 PE=4 SV=1
MM1 pKa = 8.11DD2 pKa = 4.65KK3 pKa = 10.86AQRR6 pKa = 11.84LTAARR11 pKa = 11.84MAADD15 pKa = 4.68RR16 pKa = 11.84YY17 pKa = 10.94AGIARR22 pKa = 11.84AKK24 pKa = 9.77GFKK27 pKa = 9.78RR28 pKa = 11.84HH29 pKa = 6.12ADD31 pKa = 3.01GVTFTRR37 pKa = 11.84ADD39 pKa = 4.17ADD41 pKa = 4.01LTWDD45 pKa = 3.3DD46 pKa = 3.23RR47 pKa = 11.84ARR49 pKa = 11.84AFRR52 pKa = 11.84VTLYY56 pKa = 11.25KK57 pKa = 9.69MDD59 pKa = 3.61GAARR63 pKa = 11.84LAVATVRR70 pKa = 11.84ANAMLNVLLKK80 pKa = 11.08AFII83 pKa = 4.46

Molecular weight: 9.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

76

0

76

19108

51

1431

251.4

27.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.855 ± 0.473

0.984 ± 0.108

6.803 ± 0.237

6.202 ± 0.29

3.47 ± 0.148

7.144 ± 0.297

1.669 ± 0.143

5.584 ± 0.136

5.16 ± 0.311

7.269 ± 0.273

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.067 ± 0.128

4.286 ± 0.196

4.637 ± 0.417

3.836 ± 0.33

5.961 ± 0.226

5.417 ± 0.199

6.259 ± 0.296

7.117 ± 0.265

1.764 ± 0.144

3.517 ± 0.201
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski