Colletotrichum camelliae filamentous virus 1

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 6.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A286M3N6|A0A286M3N6_9VIRU Uncharacterized protein OS=Colletotrichum camelliae filamentous virus 1 OX=2029458 PE=4 SV=1
MM1 pKa = 7.33VNEE4 pKa = 4.54VISNAEE10 pKa = 4.01VGPGITMVRR19 pKa = 11.84LGRR22 pKa = 11.84DD23 pKa = 3.19DD24 pKa = 3.81MEE26 pKa = 4.52GVISDD31 pKa = 3.59FTRR34 pKa = 11.84THH36 pKa = 6.0ILDD39 pKa = 3.59PRR41 pKa = 11.84FSLSFCIAIYY51 pKa = 10.6NVIQYY56 pKa = 10.21PEE58 pKa = 4.61GYY60 pKa = 9.71EE61 pKa = 4.01VADD64 pKa = 4.03KK65 pKa = 11.17GNSFGRR71 pKa = 11.84IVIIADD77 pKa = 3.59YY78 pKa = 9.95EE79 pKa = 4.16WRR81 pKa = 11.84GLEE84 pKa = 3.76KK85 pKa = 10.76DD86 pKa = 3.56LAIGVWFPDD95 pKa = 3.3LKK97 pKa = 11.1AFCFVDD103 pKa = 3.54LHH105 pKa = 6.58PVLSDD110 pKa = 3.66PPNLRR115 pKa = 11.84PNCWVDD121 pKa = 3.22VLTGVAGQGVIVTALLGASARR142 pKa = 11.84LLQDD146 pKa = 3.75RR147 pKa = 11.84YY148 pKa = 10.15LHH150 pKa = 6.36KK151 pKa = 11.23SPDD154 pKa = 3.55KK155 pKa = 10.6FSCRR159 pKa = 11.84YY160 pKa = 9.6EE161 pKa = 4.69DD162 pKa = 4.06DD163 pKa = 3.75SKK165 pKa = 11.86LPGVQFAGRR174 pKa = 11.84NVEE177 pKa = 4.31YY178 pKa = 11.08NRR180 pKa = 11.84MAHH183 pKa = 6.32GLAVPTSADD192 pKa = 3.09EE193 pKa = 4.79GGSVLYY199 pKa = 9.89PDD201 pKa = 4.27YY202 pKa = 11.14DD203 pKa = 3.69SSEE206 pKa = 4.09EE207 pKa = 4.19SEE209 pKa = 4.18

Molecular weight: 23.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A286M3N4|A0A286M3N4_9VIRU Uncharacterized protein OS=Colletotrichum camelliae filamentous virus 1 OX=2029458 PE=4 SV=1
MM1 pKa = 7.88PFFSHH6 pKa = 6.94RR7 pKa = 11.84RR8 pKa = 11.84FLFFFSAVVIGPDD21 pKa = 3.07RR22 pKa = 11.84SNPRR26 pKa = 11.84APRR29 pKa = 11.84RR30 pKa = 11.84GWWNVPRR37 pKa = 11.84DD38 pKa = 3.7AVV40 pKa = 3.35

Molecular weight: 4.79 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9

0

9

3289

40

771

365.4

39.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.125 ± 0.764

1.459 ± 0.26

6.841 ± 0.508

4.439 ± 0.37

3.588 ± 0.388

7.936 ± 0.572

1.976 ± 0.244

2.615 ± 0.351

2.615 ± 0.448

8.392 ± 0.703

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.524 ± 0.277

2.463 ± 0.194

6.719 ± 0.518

1.763 ± 0.252

8.696 ± 0.642

8.878 ± 0.91

5.412 ± 0.386

10.125 ± 0.632

0.912 ± 0.159

2.524 ± 0.33
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski