Dysgonomonas alginatilytica

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Dysgonomonadaceae; Dysgonomonas

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4322 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2V3PRK5|A0A2V3PRK5_9BACT Uncharacterized protein OS=Dysgonomonas alginatilytica OX=1605892 GN=CLV62_10813 PE=4 SV=1
MM1 pKa = 7.63KK2 pKa = 10.21ISPNKK7 pKa = 9.62FVSLSYY13 pKa = 10.8DD14 pKa = 3.62LNVGEE19 pKa = 4.67GDD21 pKa = 3.42EE22 pKa = 4.38KK23 pKa = 11.42EE24 pKa = 4.5LMEE27 pKa = 4.92KK28 pKa = 9.17ATPEE32 pKa = 3.81QPLEE36 pKa = 4.37FIFGTNSMLEE46 pKa = 4.03AFEE49 pKa = 4.87KK50 pKa = 11.02NVDD53 pKa = 3.51GLAEE57 pKa = 4.37GDD59 pKa = 3.78SFDD62 pKa = 6.45FILTPDD68 pKa = 3.47QAYY71 pKa = 10.41GEE73 pKa = 4.48YY74 pKa = 10.26DD75 pKa = 3.75DD76 pKa = 5.02EE77 pKa = 5.52HH78 pKa = 8.85LVDD81 pKa = 4.02LPKK84 pKa = 11.0NIFEE88 pKa = 4.37VDD90 pKa = 3.53GKK92 pKa = 10.87VDD94 pKa = 3.45EE95 pKa = 4.63SVVFEE100 pKa = 4.66GNTIPMMDD108 pKa = 3.38SNGNRR113 pKa = 11.84LNGSVVSVSDD123 pKa = 3.95DD124 pKa = 3.39TVQMDD129 pKa = 4.73FNHH132 pKa = 6.85PLAGEE137 pKa = 4.2TLHH140 pKa = 6.11FTGNVLSIRR149 pKa = 11.84EE150 pKa = 4.01ASAEE154 pKa = 3.94EE155 pKa = 3.93IAALFAPQGGGCGSGCGCGSSDD177 pKa = 3.55EE178 pKa = 4.89SEE180 pKa = 4.62GCGSGCGCGSSDD192 pKa = 3.38EE193 pKa = 4.92SEE195 pKa = 4.28GSSCGSGCGCHH206 pKa = 6.4

Molecular weight: 21.63 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2V3PJX7|A0A2V3PJX7_9BACT Uncharacterized protein OS=Dysgonomonas alginatilytica OX=1605892 GN=CLV62_15220 PE=4 SV=1
MM1 pKa = 7.29ATLTFYY7 pKa = 11.1LRR9 pKa = 11.84ASSRR13 pKa = 11.84IGCHH17 pKa = 6.53AGTLCFRR24 pKa = 11.84IIHH27 pKa = 5.83ARR29 pKa = 11.84RR30 pKa = 11.84VLSHH34 pKa = 5.47STNIRR39 pKa = 11.84LYY41 pKa = 10.03CRR43 pKa = 11.84EE44 pKa = 3.79WDD46 pKa = 3.57STSRR50 pKa = 11.84RR51 pKa = 11.84IVLSDD56 pKa = 3.18SSEE59 pKa = 3.81EE60 pKa = 4.06RR61 pKa = 11.84ITYY64 pKa = 9.87LNKK67 pKa = 10.38AEE69 pKa = 3.98QQQQNIEE76 pKa = 3.8QSFAHH81 pKa = 7.1IIHH84 pKa = 6.31NLEE87 pKa = 3.33EE88 pKa = 4.11SGRR91 pKa = 11.84YY92 pKa = 8.58RR93 pKa = 11.84VEE95 pKa = 6.13DD96 pKa = 2.85IMGRR100 pKa = 11.84YY101 pKa = 9.11RR102 pKa = 11.84LRR104 pKa = 11.84LDD106 pKa = 3.51SHH108 pKa = 6.21WLYY111 pKa = 10.99HH112 pKa = 5.1FTGQQSHH119 pKa = 5.68TLIASGRR126 pKa = 11.84EE127 pKa = 3.7RR128 pKa = 11.84TARR131 pKa = 11.84AYY133 pKa = 8.14RR134 pKa = 11.84TAARR138 pKa = 11.84GLIAFNAGRR147 pKa = 11.84DD148 pKa = 3.8LPLKK152 pKa = 10.16HH153 pKa = 6.73LNSCLIKK160 pKa = 10.89DD161 pKa = 4.49FEE163 pKa = 5.23NDD165 pKa = 3.24MKK167 pKa = 11.27HH168 pKa = 6.6KK169 pKa = 10.69GKK171 pKa = 8.13TLNTISFYY179 pKa = 10.26MRR181 pKa = 11.84NLRR184 pKa = 11.84AIYY187 pKa = 10.18NKK189 pKa = 10.44AIACKK194 pKa = 10.09RR195 pKa = 11.84IADD198 pKa = 3.78TGQNPFSDD206 pKa = 4.32VYY208 pKa = 10.99TGVQKK213 pKa = 9.54TRR215 pKa = 11.84KK216 pKa = 9.28RR217 pKa = 11.84SLTMDD222 pKa = 3.26QLKK225 pKa = 8.51TLNDD229 pKa = 3.86LDD231 pKa = 4.67LSLGSGTTAGAKK243 pKa = 9.53EE244 pKa = 4.17GSSVRR249 pKa = 11.84DD250 pKa = 3.28QEE252 pKa = 4.13IFRR255 pKa = 11.84GLDD258 pKa = 2.85AARR261 pKa = 11.84RR262 pKa = 11.84LFLFCFHH269 pKa = 6.83ARR271 pKa = 11.84GMSFVDD277 pKa = 3.74LAYY280 pKa = 10.55LRR282 pKa = 11.84KK283 pKa = 10.12EE284 pKa = 4.04NIQGKK289 pKa = 9.05RR290 pKa = 11.84IRR292 pKa = 11.84YY293 pKa = 7.09YY294 pKa = 10.19RR295 pKa = 11.84KK296 pKa = 8.28KK297 pKa = 8.92TGGLIEE303 pKa = 5.01LKK305 pKa = 8.82ITPVMQEE312 pKa = 4.19IIHH315 pKa = 5.88SFSLQTRR322 pKa = 11.84DD323 pKa = 2.97SLYY326 pKa = 10.04IFPILVSPHH335 pKa = 6.02KK336 pKa = 9.81PLRR339 pKa = 11.84LQYY342 pKa = 10.73EE343 pKa = 4.19SGLRR347 pKa = 11.84LQNNRR352 pKa = 11.84LKK354 pKa = 10.78RR355 pKa = 11.84LARR358 pKa = 11.84LAGIHH363 pKa = 5.97SAVSTHH369 pKa = 5.53VSRR372 pKa = 11.84HH373 pKa = 4.32SWASAAKK380 pKa = 10.07KK381 pKa = 10.14EE382 pKa = 4.13NLPVIPVRR390 pKa = 11.84SMPRR394 pKa = 11.84RR395 pKa = 3.52

Molecular weight: 45.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4322

0

4322

1489738

29

2897

344.7

38.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.255 ± 0.036

0.955 ± 0.012

5.763 ± 0.023

6.211 ± 0.031

4.816 ± 0.029

6.421 ± 0.035

1.627 ± 0.015

8.071 ± 0.036

7.416 ± 0.03

9.055 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.347 ± 0.016

5.972 ± 0.033

3.48 ± 0.02

3.38 ± 0.022

3.86 ± 0.024

6.813 ± 0.029

5.736 ± 0.028

6.007 ± 0.029

1.219 ± 0.015

4.596 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski