Odoribacter laneus CAG:561

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Odoribacteraceae; Odoribacter; environmental samples

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2812 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R5VJA3|R5VJA3_9BACT SusC/RagA family TonB-linked outer membrane protein OS=Odoribacter laneus CAG:561 OX=1263089 GN=BN709_00202 PE=4 SV=1
MM1 pKa = 7.85NYY3 pKa = 9.72RR4 pKa = 11.84FEE6 pKa = 4.82ISLPNSSDD14 pKa = 3.42FRR16 pKa = 11.84CEE18 pKa = 3.34IAISGDD24 pKa = 3.19QTFQQLHH31 pKa = 6.34DD32 pKa = 5.23KK33 pKa = 10.33IIEE36 pKa = 4.01VLGYY40 pKa = 10.4DD41 pKa = 3.92SSQMASFYY49 pKa = 10.92TLDD52 pKa = 3.26KK53 pKa = 9.83MGNRR57 pKa = 11.84VKK59 pKa = 10.55EE60 pKa = 3.86IALMEE65 pKa = 4.24MSTDD69 pKa = 3.63DD70 pKa = 4.1EE71 pKa = 4.45EE72 pKa = 6.76ANTLVMDD79 pKa = 3.78VTLIRR84 pKa = 11.84EE85 pKa = 4.24IVNASCIEE93 pKa = 3.92LEE95 pKa = 4.28YY96 pKa = 11.42VFDD99 pKa = 4.57FFNNRR104 pKa = 11.84YY105 pKa = 9.06FRR107 pKa = 11.84VEE109 pKa = 3.71YY110 pKa = 10.26AGEE113 pKa = 4.17YY114 pKa = 9.76IADD117 pKa = 3.92SADD120 pKa = 3.4VLPVCLYY127 pKa = 10.7CDD129 pKa = 3.66GDD131 pKa = 3.42IPEE134 pKa = 4.12QMEE137 pKa = 4.92IEE139 pKa = 5.42DD140 pKa = 3.93NDD142 pKa = 2.83KK143 pKa = 9.97WAYY146 pKa = 9.73GKK148 pKa = 10.42SDD150 pKa = 3.64EE151 pKa = 4.94EE152 pKa = 4.52YY153 pKa = 10.27DD154 pKa = 3.6DD155 pKa = 5.18SFMEE159 pKa = 4.21EE160 pKa = 3.86FSDD163 pKa = 3.99FTEE166 pKa = 4.13EE167 pKa = 4.29GEE169 pKa = 4.28NYY171 pKa = 10.39GDD173 pKa = 4.0EE174 pKa = 4.39EE175 pKa = 4.27EE176 pKa = 5.13GGYY179 pKa = 10.66DD180 pKa = 4.56DD181 pKa = 6.18EE182 pKa = 4.88EE183 pKa = 5.74DD184 pKa = 3.58EE185 pKa = 4.73FGGKK189 pKa = 9.1GRR191 pKa = 11.84YY192 pKa = 8.52DD193 pKa = 3.53DD194 pKa = 4.66RR195 pKa = 11.84YY196 pKa = 10.88EE197 pKa = 5.39SIDD200 pKa = 4.16DD201 pKa = 4.25YY202 pKa = 11.47IDD204 pKa = 3.38RR205 pKa = 11.84LL206 pKa = 3.74

Molecular weight: 24.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R5VI80|R5VI80_9BACT Uncharacterized protein OS=Odoribacter laneus CAG:561 OX=1263089 GN=BN709_02510 PE=4 SV=1
MM1 pKa = 7.94DD2 pKa = 5.38PAGTMTGANSYY13 pKa = 11.04AEE15 pKa = 4.29STSALTAFLAEE26 pKa = 4.17MVFTFIFVLVVLGVTDD42 pKa = 3.71SDD44 pKa = 3.31KK45 pKa = 10.76GTPVMCGLAIGLTLVLVHH63 pKa = 6.36IVCIPITGTSVNPARR78 pKa = 11.84SVGPALFEE86 pKa = 4.27GGRR89 pKa = 11.84ALSQLWLFIVAPSVGAALLAAGSSKK114 pKa = 10.85LLYY117 pKa = 8.05TTGKK121 pKa = 8.59YY122 pKa = 10.17CYY124 pKa = 9.93LILICLSRR132 pKa = 11.84RR133 pKa = 11.84RR134 pKa = 11.84FIPVARR140 pKa = 11.84SISKK144 pKa = 10.32RR145 pKa = 11.84VLCLICRR152 pKa = 11.84RR153 pKa = 11.84NRR155 pKa = 11.84RR156 pKa = 11.84ANGWRR161 pKa = 11.84LSGGRR166 pKa = 11.84RR167 pKa = 11.84ITGWKK172 pKa = 10.12LNN174 pKa = 3.79

Molecular weight: 18.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2812

0

2812

988689

29

2247

351.6

39.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.89 ± 0.044

1.258 ± 0.016

4.929 ± 0.029

7.018 ± 0.047

4.841 ± 0.036

6.84 ± 0.039

1.813 ± 0.017

7.532 ± 0.043

6.861 ± 0.043

9.686 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.541 ± 0.021

4.763 ± 0.036

3.787 ± 0.022

3.566 ± 0.021

4.712 ± 0.035

5.709 ± 0.029

5.278 ± 0.034

6.365 ± 0.038

1.215 ± 0.017

4.398 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski