Vibrio mytili

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3541 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C3I4A1|A0A0C3I4A1_9VIBR Cyclopropane-fatty-acyl-phospholipid synthase OS=Vibrio mytili OX=50718 GN=SU60_17205 PE=3 SV=1
MM1 pKa = 7.41SHH3 pKa = 6.51EE4 pKa = 4.59DD5 pKa = 3.36EE6 pKa = 4.41YY7 pKa = 11.8LSVEE11 pKa = 4.13EE12 pKa = 5.07LIEE15 pKa = 4.01IQKK18 pKa = 10.79EE19 pKa = 3.96EE20 pKa = 4.06TRR22 pKa = 11.84DD23 pKa = 3.25IIAALLEE30 pKa = 5.14DD31 pKa = 4.8GSDD34 pKa = 3.49PDD36 pKa = 3.36SLYY39 pKa = 10.83EE40 pKa = 4.15IEE42 pKa = 4.37HH43 pKa = 6.59HH44 pKa = 7.04LFAEE48 pKa = 4.7DD49 pKa = 4.7FSTLEE54 pKa = 4.02KK55 pKa = 10.82AVVEE59 pKa = 4.0AFKK62 pKa = 10.62MGFEE66 pKa = 4.02VLEE69 pKa = 4.38AEE71 pKa = 4.32EE72 pKa = 4.84TEE74 pKa = 5.32DD75 pKa = 4.16EE76 pKa = 4.91DD77 pKa = 5.29GNKK80 pKa = 9.92LLCCDD85 pKa = 3.36ATMEE89 pKa = 4.29STLDD93 pKa = 3.39AEE95 pKa = 5.59AIDD98 pKa = 3.87AQVEE102 pKa = 4.49KK103 pKa = 10.53LVHH106 pKa = 5.94LAEE109 pKa = 5.18KK110 pKa = 10.82YY111 pKa = 10.77DD112 pKa = 3.78IIYY115 pKa = 10.15DD116 pKa = 3.64GWGTYY121 pKa = 9.39YY122 pKa = 10.49EE123 pKa = 5.16GEE125 pKa = 4.17DD126 pKa = 3.65ALYY129 pKa = 10.13PDD131 pKa = 4.77EE132 pKa = 7.02DD133 pKa = 4.51EE134 pKa = 6.02DD135 pKa = 5.89DD136 pKa = 3.9EE137 pKa = 4.67

Molecular weight: 15.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C3HMA0|A0A0C3HMA0_9VIBR Uncharacterized protein OS=Vibrio mytili OX=50718 GN=SU60_20375 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.5RR3 pKa = 11.84TFQPTVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 7.65RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.44NGRR28 pKa = 11.84KK29 pKa = 9.39VINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.22GRR39 pKa = 11.84ARR41 pKa = 11.84LSKK44 pKa = 10.83

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3541

0

3541

1062854

31

1512

300.2

33.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.426 ± 0.041

1.082 ± 0.016

5.549 ± 0.035

6.498 ± 0.043

4.116 ± 0.033

6.823 ± 0.035

2.286 ± 0.021

6.317 ± 0.033

5.434 ± 0.035

10.213 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.717 ± 0.018

4.22 ± 0.027

3.891 ± 0.022

4.481 ± 0.031

4.56 ± 0.033

6.554 ± 0.035

5.329 ± 0.028

7.176 ± 0.034

1.279 ± 0.016

3.047 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski