Odonata-associated circular virus-1

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses

Average proteome isoelectric point is 7.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B4UGI4|A0A0B4UGI4_9VIRU Putative capsid protein OS=Odonata-associated circular virus-1 OX=1592109 PE=4 SV=1
MM1 pKa = 7.38SAEE4 pKa = 4.01QPKK7 pKa = 10.4PSDD10 pKa = 3.81KK11 pKa = 10.79ASHH14 pKa = 6.58WLLTLNNPTADD25 pKa = 3.52DD26 pKa = 4.06RR27 pKa = 11.84EE28 pKa = 4.31RR29 pKa = 11.84CKK31 pKa = 10.78NLPKK35 pKa = 9.44WVKK38 pKa = 9.77RR39 pKa = 11.84FKK41 pKa = 10.77FQDD44 pKa = 3.68EE45 pKa = 4.23IGEE48 pKa = 4.38SGTLHH53 pKa = 5.11IQGYY57 pKa = 8.48IHH59 pKa = 6.94TEE61 pKa = 4.1TVRR64 pKa = 11.84LSALKK69 pKa = 9.34KK70 pKa = 8.18WFPRR74 pKa = 11.84GHH76 pKa = 6.48FEE78 pKa = 4.11VCRR81 pKa = 11.84NPKK84 pKa = 9.82AAEE87 pKa = 3.91NYY89 pKa = 9.43AGKK92 pKa = 10.51EE93 pKa = 4.06EE94 pKa = 4.26TSVPGTQHH102 pKa = 6.84DD103 pKa = 4.08FKK105 pKa = 11.13NTVEE109 pKa = 4.28QVTMMDD115 pKa = 3.52NLIRR119 pKa = 11.84LCDD122 pKa = 3.86IQPKK126 pKa = 10.27IIDD129 pKa = 3.32HH130 pKa = 7.5LIRR133 pKa = 11.84QNAVSTDD140 pKa = 3.1AKK142 pKa = 10.62QVLTGKK148 pKa = 9.51QLYY151 pKa = 8.51QEE153 pKa = 4.89EE154 pKa = 4.88YY155 pKa = 8.01WGCVNVILEE164 pKa = 4.59EE165 pKa = 4.24NPDD168 pKa = 4.27LISTYY173 pKa = 9.64TMPQYY178 pKa = 10.84CKK180 pKa = 10.26AWVNCRR186 pKa = 11.84PAILNAHH193 pKa = 6.63RR194 pKa = 11.84VRR196 pKa = 11.84QYY198 pKa = 10.82EE199 pKa = 3.97NEE201 pKa = 4.12RR202 pKa = 11.84TAGQPDD208 pKa = 3.98KK209 pKa = 11.71NEE211 pKa = 4.46IITPEE216 pKa = 4.11DD217 pKa = 3.43LTTNEE222 pKa = 4.79CLICSKK228 pKa = 10.36EE229 pKa = 4.02KK230 pKa = 11.03CEE232 pKa = 4.8CEE234 pKa = 3.81AA235 pKa = 4.99

Molecular weight: 27.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B4UGI4|A0A0B4UGI4_9VIRU Putative capsid protein OS=Odonata-associated circular virus-1 OX=1592109 PE=4 SV=1
MM1 pKa = 7.09VKK3 pKa = 10.21LVRR6 pKa = 11.84RR7 pKa = 11.84RR8 pKa = 11.84RR9 pKa = 11.84VLRR12 pKa = 11.84KK13 pKa = 9.33RR14 pKa = 11.84KK15 pKa = 9.07SVPKK19 pKa = 9.47RR20 pKa = 11.84RR21 pKa = 11.84MMRR24 pKa = 11.84RR25 pKa = 11.84GVGRR29 pKa = 11.84ASVKK33 pKa = 9.56RR34 pKa = 11.84TSDD37 pKa = 3.29YY38 pKa = 11.17AKK40 pKa = 10.2CVEE43 pKa = 4.04IQEE46 pKa = 4.58TKK48 pKa = 7.78MTAVNDD54 pKa = 3.72ATLDD58 pKa = 3.74SVGGVINFCLQDD70 pKa = 3.24FQRR73 pKa = 11.84PQEE76 pKa = 3.76IAHH79 pKa = 6.53AYY81 pKa = 8.94KK82 pKa = 10.43YY83 pKa = 10.69YY84 pKa = 10.56RR85 pKa = 11.84AAKK88 pKa = 10.24CEE90 pKa = 3.96ITFIPYY96 pKa = 10.09FNIAQTANAAATQLPQLYY114 pKa = 7.46MTVDD118 pKa = 3.28RR119 pKa = 11.84LSNRR123 pKa = 11.84WIAPTEE129 pKa = 4.0SEE131 pKa = 4.09MLSRR135 pKa = 11.84GVSPRR140 pKa = 11.84LFTKK144 pKa = 10.43KK145 pKa = 8.99MRR147 pKa = 11.84LSFKK151 pKa = 10.64PNLLQGISLEE161 pKa = 4.44TQQSVNYY168 pKa = 9.51PSGSPPGGNPAGISNLGYY186 pKa = 10.09QKK188 pKa = 10.96AIAVFNKK195 pKa = 9.98GLPTQQSYY203 pKa = 10.72GYY205 pKa = 9.73SNNSTTGALQAGQVLAPLGVNPYY228 pKa = 10.24DD229 pKa = 3.6IRR231 pKa = 11.84YY232 pKa = 8.84HH233 pKa = 5.83GAAFVPAIEE242 pKa = 4.22VLAANTPVAVGDD254 pKa = 3.81IQVKK258 pKa = 8.22ITWEE262 pKa = 4.19SKK264 pKa = 9.99RR265 pKa = 11.84PRR267 pKa = 11.84ALMTNSPLNEE277 pKa = 4.99LIPYY281 pKa = 9.52VSSCCQGNTNAVLNTQPTSYY301 pKa = 10.55PSGAIGAAMTVLL313 pKa = 3.74

Molecular weight: 34.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

548

235

313

274.0

30.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.212 ± 1.448

2.737 ± 0.975

3.467 ± 1.053

5.839 ± 2.262

2.372 ± 0.157

5.474 ± 1.056

1.642 ± 0.858

5.474 ± 0.31

6.204 ± 0.935

7.482 ± 0.159

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.372 ± 0.43

6.204 ± 0.115

6.204 ± 0.432

5.657 ± 0.08

6.204 ± 0.705

5.839 ± 1.291

6.934 ± 0.192

6.569 ± 0.94

1.277 ± 0.546

3.832 ± 0.548
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski