Xinzhou dimarhabdovirus virus 1

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KND6|A0A1L3KND6_9VIRU Putative glycoprotein OS=Xinzhou dimarhabdovirus virus 1 OX=1923768 PE=4 SV=1
MM1 pKa = 7.29LTLISTVLFLLSSKK15 pKa = 10.26FVLGGLIIPLCRR27 pKa = 11.84SGPLWHH33 pKa = 7.31KK34 pKa = 10.72INPTDD39 pKa = 3.96MICPRR44 pKa = 11.84YY45 pKa = 9.74EE46 pKa = 3.97SGPPEE51 pKa = 4.71GEE53 pKa = 3.9MNMTDD58 pKa = 2.98IQTFDD63 pKa = 3.18IPAISGKK70 pKa = 8.38QLGYY74 pKa = 9.88LCHH77 pKa = 5.88GVIYY81 pKa = 10.14RR82 pKa = 11.84VICIKK87 pKa = 10.78GVFGGEE93 pKa = 4.33TINKK97 pKa = 9.2VILPTKK103 pKa = 9.21ITPNEE108 pKa = 3.92CEE110 pKa = 4.3VAVKK114 pKa = 10.26EE115 pKa = 4.13YY116 pKa = 9.89LTTAEE121 pKa = 4.53DD122 pKa = 3.43HH123 pKa = 6.71RR124 pKa = 11.84SGYY127 pKa = 10.26FPGKK131 pKa = 8.0YY132 pKa = 8.9CVYY135 pKa = 9.97EE136 pKa = 3.82ILSTHH141 pKa = 6.0TEE143 pKa = 3.81FSDD146 pKa = 3.33KK147 pKa = 11.01KK148 pKa = 10.11FILVSDD154 pKa = 3.73HH155 pKa = 6.05TVLYY159 pKa = 10.53DD160 pKa = 3.79PYY162 pKa = 10.59ADD164 pKa = 3.39QWIDD168 pKa = 3.34TLFLGGRR175 pKa = 11.84CDD177 pKa = 3.5TRR179 pKa = 11.84SCRR182 pKa = 11.84TIKK185 pKa = 10.86DD186 pKa = 3.55SVVWISNVVKK196 pKa = 9.29PACPKK201 pKa = 9.99AVSLLVHH208 pKa = 6.02VAYY211 pKa = 10.09EE212 pKa = 4.36GKK214 pKa = 10.35KK215 pKa = 9.48PLTIHH220 pKa = 6.8GPTIPTSKK228 pKa = 11.05LEE230 pKa = 4.24GACVTKK236 pKa = 10.65FCGTKK241 pKa = 10.29GLRR244 pKa = 11.84LSSGFFIIPPASWIKK259 pKa = 10.42VFKK262 pKa = 9.99TDD264 pKa = 3.34CTDD267 pKa = 3.06GVSIRR272 pKa = 11.84GITWEE277 pKa = 4.44SVVQDD282 pKa = 3.03TVMYY286 pKa = 10.84NEE288 pKa = 4.14ISVIRR293 pKa = 11.84LHH295 pKa = 6.58CLNTIATMSALGRR308 pKa = 11.84ASSVQLGIFQPWTPGIHH325 pKa = 5.33PVYY328 pKa = 10.28RR329 pKa = 11.84VGVDD333 pKa = 3.04NHH335 pKa = 7.18LEE337 pKa = 4.2TKK339 pKa = 8.31MCGYY343 pKa = 10.24ILGEE347 pKa = 4.43GIDD350 pKa = 3.9MNEE353 pKa = 4.54DD354 pKa = 3.02GAIGKK359 pKa = 8.75DD360 pKa = 3.49HH361 pKa = 7.27LGHH364 pKa = 6.94LVFWQDD370 pKa = 2.46WVSPRR375 pKa = 11.84KK376 pKa = 9.72LSCEE380 pKa = 3.71AYY382 pKa = 9.8GPNGIYY388 pKa = 9.78RR389 pKa = 11.84DD390 pKa = 4.06EE391 pKa = 4.47KK392 pKa = 10.89CQLHH396 pKa = 5.66YY397 pKa = 10.4PWIEE401 pKa = 3.62LRR403 pKa = 11.84QDD405 pKa = 2.61IMHH408 pKa = 7.02RR409 pKa = 11.84SILVQQTLQEE419 pKa = 4.4APHH422 pKa = 5.71VTEE425 pKa = 3.51QHH427 pKa = 5.51YY428 pKa = 10.81SQTEE432 pKa = 4.21LEE434 pKa = 4.41SDD436 pKa = 3.61FQLFDD441 pKa = 4.81KK442 pKa = 11.05DD443 pKa = 3.69FTDD446 pKa = 3.58TKK448 pKa = 10.08DD449 pKa = 2.93IEE451 pKa = 4.22MAIFSWTSSVRR462 pKa = 11.84LGLAIGGVVLVIIVGLVLLVKK483 pKa = 10.51LGLIAYY489 pKa = 8.59IWDD492 pKa = 3.38KK493 pKa = 10.56CCRR496 pKa = 11.84RR497 pKa = 11.84KK498 pKa = 8.0QHH500 pKa = 5.54RR501 pKa = 11.84QEE503 pKa = 4.71SIHH506 pKa = 6.88LEE508 pKa = 4.06PLNPIYY514 pKa = 10.88SS515 pKa = 3.6

Molecular weight: 57.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KND6|A0A1L3KND6_9VIRU Putative glycoprotein OS=Xinzhou dimarhabdovirus virus 1 OX=1923768 PE=4 SV=1
MM1 pKa = 7.34KK2 pKa = 10.42RR3 pKa = 11.84ILSKK7 pKa = 10.64SWWTSKK13 pKa = 9.9SHH15 pKa = 4.26SHH17 pKa = 6.07EE18 pKa = 4.19MGEE21 pKa = 4.5SSGSHH26 pKa = 6.97PEE28 pKa = 4.12SQSVPVSWDD37 pKa = 2.84QGVALTEE44 pKa = 4.35PPSAPLSSSGPFCLDD59 pKa = 3.58LEE61 pKa = 4.71VEE63 pKa = 4.72AYY65 pKa = 10.82LHH67 pKa = 5.23VQCNRR72 pKa = 11.84GVSVKK77 pKa = 9.58TLSQHH82 pKa = 5.55ISQYY86 pKa = 9.8RR87 pKa = 11.84DD88 pKa = 2.95AYY90 pKa = 10.27QGEE93 pKa = 4.28LGLYY97 pKa = 8.48GVNSIVLCLALSGVNKK113 pKa = 10.27CQLTEE118 pKa = 3.72SSAYY122 pKa = 8.43HH123 pKa = 5.9FKK125 pKa = 9.73YY126 pKa = 9.04TSEE129 pKa = 3.85IATVCRR135 pKa = 11.84FFTQSDD141 pKa = 3.44KK142 pKa = 11.27TILFRR147 pKa = 11.84YY148 pKa = 8.49GRR150 pKa = 11.84VVSKK154 pKa = 10.32SAWSSLGIGHH164 pKa = 6.2KK165 pKa = 8.5TNWVFSVSLKK175 pKa = 7.64PTRR178 pKa = 11.84VSGLDD183 pKa = 3.7YY184 pKa = 10.82EE185 pKa = 4.47KK186 pKa = 10.64HH187 pKa = 5.49APKK190 pKa = 10.6AFAEE194 pKa = 4.35LFPLMEE200 pKa = 5.5LNFSRR205 pKa = 11.84DD206 pKa = 3.21PEE208 pKa = 4.39TNQIILVV215 pKa = 3.82

Molecular weight: 23.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

2904

215

2174

968.0

110.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.616 ± 0.418

1.86 ± 0.639

4.511 ± 0.488

6.267 ± 0.391

4.408 ± 0.352

5.82 ± 0.723

2.927 ± 0.345

7.025 ± 1.031

5.131 ± 0.249

10.572 ± 0.497

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.376 ± 0.357

4.787 ± 1.241

4.545 ± 0.261

3.099 ± 0.338

4.959 ± 0.593

9.539 ± 1.595

5.992 ± 0.326

6.198 ± 0.843

2.135 ± 0.054

4.236 ± 0.276
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski