Maize associated rhabdovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; unclassified Rhabdoviridae

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1X9Y2V8|A0A1X9Y2V8_9RHAB Putative P protein OS=Maize associated rhabdovirus OX=2003308 PE=4 SV=1
MM1 pKa = 8.09DD2 pKa = 5.23APKK5 pKa = 10.69ASDD8 pKa = 3.32IFSQVPDD15 pKa = 4.2DD16 pKa = 4.21VEE18 pKa = 4.94PDD20 pKa = 3.57YY21 pKa = 11.36EE22 pKa = 4.23IDD24 pKa = 3.45EE25 pKa = 4.87DD26 pKa = 4.97EE27 pKa = 4.86IFAKK31 pKa = 10.4PGPTQAEE38 pKa = 4.29PNNQEE43 pKa = 3.92DD44 pKa = 4.01ALDD47 pKa = 3.86EE48 pKa = 4.38EE49 pKa = 5.23EE50 pKa = 5.01EE51 pKa = 4.41EE52 pKa = 4.36QHH54 pKa = 6.61SDD56 pKa = 3.49PPPASGNPPDD66 pKa = 4.37YY67 pKa = 10.62RR68 pKa = 11.84FKK70 pKa = 10.57TISAMTDD77 pKa = 3.73FVRR80 pKa = 11.84KK81 pKa = 7.04TANDD85 pKa = 3.11KK86 pKa = 11.37GITVKK91 pKa = 10.77KK92 pKa = 9.21EE93 pKa = 3.34WMNILTRR100 pKa = 11.84EE101 pKa = 4.03WHH103 pKa = 6.43KK104 pKa = 11.53KK105 pKa = 8.67NADD108 pKa = 3.33VYY110 pKa = 10.96ASHH113 pKa = 7.56IDD115 pKa = 3.72FFFLGITGEE124 pKa = 4.31RR125 pKa = 11.84NLSVEE130 pKa = 4.64KK131 pKa = 10.66DD132 pKa = 3.61FKK134 pKa = 11.39DD135 pKa = 2.87IAKK138 pKa = 10.4RR139 pKa = 11.84MNDD142 pKa = 3.14DD143 pKa = 3.43VNRR146 pKa = 11.84VSGVGKK152 pKa = 8.55QLKK155 pKa = 10.13DD156 pKa = 3.29ISDD159 pKa = 3.87KK160 pKa = 10.5MSKK163 pKa = 10.73DD164 pKa = 3.35LDD166 pKa = 3.73AKK168 pKa = 10.46MKK170 pKa = 10.85LLDD173 pKa = 4.07AKK175 pKa = 10.71LEE177 pKa = 4.26KK178 pKa = 10.05FNSMMEE184 pKa = 4.17KK185 pKa = 10.37NEE187 pKa = 4.02SFLEE191 pKa = 4.32SASKK195 pKa = 10.19QSSVASWAAEE205 pKa = 3.79ARR207 pKa = 11.84DD208 pKa = 4.14EE209 pKa = 4.31PPKK212 pKa = 10.15TKK214 pKa = 9.22KK215 pKa = 8.87TSPRR219 pKa = 11.84MKK221 pKa = 9.84ILRR224 pKa = 11.84FLSGIGFSQVEE235 pKa = 4.25AQNVIKK241 pKa = 10.82VGAHH245 pKa = 6.11HH246 pKa = 7.49IITEE250 pKa = 4.03EE251 pKa = 3.7MMEE254 pKa = 4.15NVFTGLADD262 pKa = 4.35DD263 pKa = 4.31EE264 pKa = 4.85LKK266 pKa = 11.0EE267 pKa = 4.29EE268 pKa = 4.36YY269 pKa = 10.4EE270 pKa = 4.7QMLCLEE276 pKa = 4.29GQKK279 pKa = 10.48LVAEE283 pKa = 4.34ARR285 pKa = 11.84EE286 pKa = 4.17KK287 pKa = 10.96KK288 pKa = 10.1NKK290 pKa = 10.14KK291 pKa = 9.36KK292 pKa = 10.63DD293 pKa = 3.2IYY295 pKa = 11.09DD296 pKa = 4.02DD297 pKa = 3.92YY298 pKa = 12.15

Molecular weight: 33.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1X9Y2V3|A0A1X9Y2V3_9RHAB Putative G protein OS=Maize associated rhabdovirus OX=2003308 PE=4 SV=1
MM1 pKa = 7.97RR2 pKa = 11.84PRR4 pKa = 11.84SLGFLHH10 pKa = 7.18LRR12 pKa = 11.84ILRR15 pKa = 11.84VKK17 pKa = 8.65MASGSEE23 pKa = 3.76QHH25 pKa = 6.59IDD27 pKa = 4.24KK28 pKa = 10.91DD29 pKa = 3.66LTDD32 pKa = 3.99AFSNVPEE39 pKa = 4.06NLAVNTVPDD48 pKa = 3.74EE49 pKa = 4.33TFSDD53 pKa = 4.05DD54 pKa = 3.2AFKK57 pKa = 10.97SHH59 pKa = 6.35SVYY62 pKa = 10.51EE63 pKa = 4.26INEE66 pKa = 3.97LTIKK70 pKa = 10.47QVVHH74 pKa = 6.17HH75 pKa = 7.08AYY77 pKa = 10.02KK78 pKa = 10.83LFRR81 pKa = 11.84NMGQKK86 pKa = 8.24TCHH89 pKa = 6.5AIIPYY94 pKa = 10.05SILAMALRR102 pKa = 11.84LPTPKK107 pKa = 10.17KK108 pKa = 10.38KK109 pKa = 9.47STTSFLTSHH118 pKa = 6.58KK119 pKa = 9.86PSGGTALEE127 pKa = 3.71QGIASKK133 pKa = 10.64LYY135 pKa = 9.72PSLDD139 pKa = 3.37LSTEE143 pKa = 3.95EE144 pKa = 4.06AAKK147 pKa = 10.32PDD149 pKa = 3.77AEE151 pKa = 4.52KK152 pKa = 10.93KK153 pKa = 10.39RR154 pKa = 11.84LTATKK159 pKa = 10.41VFGSEE164 pKa = 3.44EE165 pKa = 4.02DD166 pKa = 3.75KK167 pKa = 11.01EE168 pKa = 4.61FKK170 pKa = 10.38AVRR173 pKa = 11.84EE174 pKa = 4.09LEE176 pKa = 4.13EE177 pKa = 4.54EE178 pKa = 3.97IVFQFGCFLSAFLLKK193 pKa = 10.35LLCKK197 pKa = 10.37NPEE200 pKa = 4.15NIITGWDD207 pKa = 3.36AMRR210 pKa = 11.84GRR212 pKa = 11.84YY213 pKa = 7.63STFFSEE219 pKa = 4.64SAPSEE224 pKa = 4.13VKK226 pKa = 10.38RR227 pKa = 11.84PSRR230 pKa = 11.84EE231 pKa = 3.43WLTEE235 pKa = 3.74LKK237 pKa = 10.78NLFSSDD243 pKa = 3.23PMISRR248 pKa = 11.84TWVRR252 pKa = 11.84TFSEE256 pKa = 4.9AEE258 pKa = 3.77DD259 pKa = 3.7HH260 pKa = 7.0LPAGEE265 pKa = 4.12QQVGMLRR272 pKa = 11.84YY273 pKa = 8.84LALMPFSYY281 pKa = 10.03TGLHH285 pKa = 6.43GYY287 pKa = 10.42KK288 pKa = 10.4LFLDD292 pKa = 4.0VSRR295 pKa = 11.84ASNLSNKK302 pKa = 8.64WLLTEE307 pKa = 4.11MTSPMTSKK315 pKa = 10.76ALKK318 pKa = 10.15LIAHH322 pKa = 6.91ILINFEE328 pKa = 4.02SRR330 pKa = 11.84IGEE333 pKa = 4.23KK334 pKa = 10.19KK335 pKa = 10.33KK336 pKa = 10.93SAFKK340 pKa = 9.39YY341 pKa = 9.87ARR343 pKa = 11.84MMSTSYY349 pKa = 10.77FQDD352 pKa = 3.44LQTKK356 pKa = 8.21NCAGLVYY363 pKa = 10.8LEE365 pKa = 4.02VKK367 pKa = 9.89ILKK370 pKa = 10.09KK371 pKa = 10.69FEE373 pKa = 4.34AFGTNSNPEE382 pKa = 4.1NIIGIEE388 pKa = 4.03KK389 pKa = 10.37VPAEE393 pKa = 4.32HH394 pKa = 7.58KK395 pKa = 11.21AMLSKK400 pKa = 10.73AADD403 pKa = 4.54FIVSAAPQRR412 pKa = 11.84NLGRR416 pKa = 11.84YY417 pKa = 8.31SEE419 pKa = 4.41SMRR422 pKa = 11.84KK423 pKa = 9.9AMIPEE428 pKa = 4.66HH429 pKa = 6.79KK430 pKa = 9.62PKK432 pKa = 10.17QHH434 pKa = 4.92QQVAKK439 pKa = 10.5KK440 pKa = 10.25EE441 pKa = 4.43DD442 pKa = 3.3IFGG445 pKa = 3.8

Molecular weight: 50.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3631

167

2066

605.2

68.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.426 ± 0.682

1.708 ± 0.703

5.095 ± 0.805

6.995 ± 0.875

4.241 ± 0.427

5.288 ± 0.417

2.368 ± 0.128

8.014 ± 0.786

6.968 ± 1.083

9.226 ± 0.824

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.167 ± 0.306

4.351 ± 0.132

4.875 ± 0.054

2.809 ± 0.337

5.095 ± 0.618

8.207 ± 0.566

5.839 ± 0.409

5.095 ± 0.665

1.652 ± 0.374

3.58 ± 0.429
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski