Gordonia phage Petra

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fairfaxidumvirus; unclassified Fairfaxidumvirus

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 89 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2U8UK99|A0A2U8UK99_9CAUD Major capsid protein OS=Gordonia phage Petra OX=2182347 GN=6 PE=4 SV=1
MM1 pKa = 8.82IMINPSNVADD11 pKa = 4.41FHH13 pKa = 6.56AAGEE17 pKa = 4.45GTYY20 pKa = 8.34WWHH23 pKa = 7.95DD24 pKa = 3.75SATDD28 pKa = 3.6AYY30 pKa = 11.05LVTDD34 pKa = 4.16TFDD37 pKa = 3.95PPTTDD42 pKa = 3.64SVYY45 pKa = 11.0LMPWDD50 pKa = 4.86GPWFAQWGEE59 pKa = 3.78NWAAAADD66 pKa = 3.82QLNSVIARR74 pKa = 11.84QEE76 pKa = 3.94EE77 pKa = 4.71EE78 pKa = 4.19PTDD81 pKa = 3.68GG82 pKa = 4.78

Molecular weight: 9.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2U8UL46|A0A2U8UL46_9CAUD Uncharacterized protein OS=Gordonia phage Petra OX=2182347 GN=43 PE=4 SV=1
MM1 pKa = 7.86RR2 pKa = 11.84APSTPHH8 pKa = 5.57TPMLGWHH15 pKa = 5.67QPCGDD20 pKa = 3.54RR21 pKa = 11.84ATPHH25 pKa = 6.05RR26 pKa = 11.84TDD28 pKa = 2.92THH30 pKa = 6.36AAPAPRR36 pKa = 11.84RR37 pKa = 11.84APTPHH42 pKa = 5.98TRR44 pKa = 11.84RR45 pKa = 11.84PRR47 pKa = 11.84MAPRR51 pKa = 11.84KK52 pKa = 6.2TTTQKK57 pKa = 10.8HH58 pKa = 6.09LGWSHH63 pKa = 4.95QQNARR68 pKa = 11.84HH69 pKa = 6.13LKK71 pKa = 8.37AQHH74 pKa = 6.47VDD76 pKa = 3.7GTPCWWCGRR85 pKa = 11.84PMWRR89 pKa = 11.84DD90 pKa = 3.09RR91 pKa = 11.84TRR93 pKa = 11.84NYY95 pKa = 10.76DD96 pKa = 3.91YY97 pKa = 10.93NPHH100 pKa = 5.65STDD103 pKa = 3.42PASGSLAADD112 pKa = 3.47HH113 pKa = 5.91SHH115 pKa = 6.52PRR117 pKa = 11.84AHH119 pKa = 7.46GGRR122 pKa = 11.84KK123 pKa = 9.13ADD125 pKa = 4.06RR126 pKa = 11.84LLHH129 pKa = 5.08GQCNKK134 pKa = 9.76EE135 pKa = 3.85RR136 pKa = 11.84GAGNHH141 pKa = 5.29DD142 pKa = 3.71HH143 pKa = 6.42QRR145 pKa = 11.84PALTGTQPDD154 pKa = 3.92TAPNNLGPLAITCWPP169 pKa = 3.6

Molecular weight: 18.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

89

0

89

17012

53

1830

191.1

20.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.527 ± 0.429

0.958 ± 0.148

6.883 ± 0.326

5.602 ± 0.311

2.822 ± 0.149

8.47 ± 0.331

2.375 ± 0.195

4.644 ± 0.161

3.321 ± 0.242

7.601 ± 0.27

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.216 ± 0.185

2.933 ± 0.149

5.937 ± 0.252

3.445 ± 0.148

7.689 ± 0.373

5.073 ± 0.177

6.713 ± 0.241

7.371 ± 0.258

2.063 ± 0.119

2.357 ± 0.169
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski