Soybean Putnam virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Caulimovirus

Average proteome isoelectric point is 7.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J7HDV8|J7HDV8_9VIRU Aspartic protease OS=Soybean Putnam virus OX=1221449 PE=3 SV=1
MM1 pKa = 7.41SLAEE5 pKa = 3.86IQKK8 pKa = 10.89AIDD11 pKa = 3.38QVKK14 pKa = 10.11RR15 pKa = 11.84LAEE18 pKa = 4.05QIEE21 pKa = 4.25KK22 pKa = 10.65LLEE25 pKa = 4.04SSKK28 pKa = 10.11TIVEE32 pKa = 3.99ASSAKK37 pKa = 10.05VIQDD41 pKa = 3.02ITSKK45 pKa = 11.16LEE47 pKa = 3.68EE48 pKa = 4.16CHH50 pKa = 6.52CNKK53 pKa = 10.42EE54 pKa = 3.91ILDD57 pKa = 3.91ALKK60 pKa = 10.95SHH62 pKa = 7.21DD63 pKa = 4.1SKK65 pKa = 11.34EE66 pKa = 4.21KK67 pKa = 10.75PEE69 pKa = 4.06TQIVNSDD76 pKa = 3.53KK77 pKa = 11.39SPSTSSLQKK86 pKa = 9.92YY87 pKa = 8.28SFPNEE92 pKa = 3.87YY93 pKa = 10.31VGNAEE98 pKa = 5.0LGSSGNPNAIVFPRR112 pKa = 11.84RR113 pKa = 3.21

Molecular weight: 12.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J7H710|J7H710_9VIRU Coat protein OS=Soybean Putnam virus OX=1221449 PE=3 SV=1
MM1 pKa = 7.31VPPNTNEE8 pKa = 3.76ATQMPHH14 pKa = 6.4IYY16 pKa = 10.16KK17 pKa = 10.35KK18 pKa = 10.98GRR20 pKa = 11.84ILKK23 pKa = 9.6FKK25 pKa = 10.26KK26 pKa = 10.24LNEE29 pKa = 4.92GIDD32 pKa = 3.49RR33 pKa = 11.84TNRR36 pKa = 11.84KK37 pKa = 9.19YY38 pKa = 10.98LFSSHH43 pKa = 6.17GSGIQTVVNHH53 pKa = 6.29CNNLNQVVARR63 pKa = 11.84NFLQLAKK70 pKa = 10.21LLSYY74 pKa = 10.71FGLSKK79 pKa = 10.91DD80 pKa = 3.45PSEE83 pKa = 5.75DD84 pKa = 3.53YY85 pKa = 11.37SKK87 pKa = 11.25DD88 pKa = 3.05PSVFKK93 pKa = 10.83RR94 pKa = 11.84FFKK97 pKa = 10.65DD98 pKa = 3.43LPSTSFKK105 pKa = 10.94KK106 pKa = 10.96GGDD109 pKa = 3.29KK110 pKa = 10.36KK111 pKa = 10.98DD112 pKa = 3.44KK113 pKa = 11.5NEE115 pKa = 3.93ILEE118 pKa = 4.42KK119 pKa = 9.91LTSLIEE125 pKa = 4.05KK126 pKa = 10.13QGTKK130 pKa = 10.47LRR132 pKa = 11.84DD133 pKa = 3.49LEE135 pKa = 4.47SKK137 pKa = 10.22IDD139 pKa = 3.71NFVKK143 pKa = 10.71NDD145 pKa = 3.23ASKK148 pKa = 11.47DD149 pKa = 3.82DD150 pKa = 4.03IKK152 pKa = 11.21DD153 pKa = 3.21LRR155 pKa = 11.84IDD157 pKa = 3.07VRR159 pKa = 11.84RR160 pKa = 11.84RR161 pKa = 11.84LDD163 pKa = 4.26SIDD166 pKa = 3.9EE167 pKa = 4.16SLKK170 pKa = 10.94KK171 pKa = 10.56IIGG174 pKa = 3.61

Molecular weight: 20.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2333

113

699

388.8

44.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.029 ± 0.474

1.586 ± 0.257

5.744 ± 0.404

7.287 ± 0.846

4.929 ± 0.271

4.158 ± 0.276

2.529 ± 0.537

7.072 ± 0.727

10.502 ± 0.405

8.401 ± 0.567

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.757 ± 0.237

5.872 ± 0.315

4.286 ± 0.37

4.715 ± 0.375

4.201 ± 0.256

8.616 ± 0.693

5.101 ± 0.271

5.272 ± 0.253

0.772 ± 0.194

3.172 ± 0.242
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski