Coprobacillus sp. CAG:605

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus; environmental samples

Average proteome isoelectric point is 6.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1211 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R5VMP0|R5VMP0_9FIRM Putative cytoplasmic protein OS=Coprobacillus sp. CAG:605 OX=1262855 GN=BN732_00448 PE=4 SV=1
MM1 pKa = 7.65LMLACLSLGAYY12 pKa = 5.91TTYY15 pKa = 11.65LMVNDD20 pKa = 3.99NAQKK24 pKa = 10.57KK25 pKa = 7.45AQKK28 pKa = 10.67VIDD31 pKa = 4.44DD32 pKa = 4.45MLDD35 pKa = 3.25EE36 pKa = 4.79ATDD39 pKa = 3.97FLNMDD44 pKa = 4.44AYY46 pKa = 10.79

Molecular weight: 5.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R5W1Y4|R5W1Y4_9FIRM Glyco_tran_28_C domain-containing protein OS=Coprobacillus sp. CAG:605 OX=1262855 GN=BN732_01202 PE=4 SV=1
MM1 pKa = 7.75SNARR5 pKa = 11.84NNARR9 pKa = 11.84AKK11 pKa = 10.14EE12 pKa = 3.94NARR15 pKa = 11.84NSAKK19 pKa = 10.77NNARR23 pKa = 11.84CNNSKK28 pKa = 10.18CHH30 pKa = 5.87ARR32 pKa = 11.84NNARR36 pKa = 11.84ANAKK40 pKa = 7.6EE41 pKa = 3.96TAEE44 pKa = 4.04

Molecular weight: 4.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1211

0

1211

355982

29

1693

294.0

33.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.712 ± 0.061

1.137 ± 0.026

6.067 ± 0.053

6.852 ± 0.067

4.029 ± 0.062

5.325 ± 0.087

1.369 ± 0.026

9.484 ± 0.077

9.503 ± 0.077

9.505 ± 0.08

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.445 ± 0.034

7.539 ± 0.079

2.493 ± 0.038

2.266 ± 0.036

3.138 ± 0.048

6.384 ± 0.068

5.677 ± 0.075

6.056 ± 0.061

0.552 ± 0.018

5.468 ± 0.068
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski