Chelonia mydas papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyozetapapillomavirus; Dyozetapapillomavirus 1

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B6RUP3|B6RUP3_9PAPI Replication protein OS=Chelonia mydas papillomavirus 1 OX=485242 GN=E1 PE=4 SV=1
MM1 pKa = 7.71HH2 pKa = 8.17DD3 pKa = 3.85KK4 pKa = 10.76LQPQKK9 pKa = 11.01GCLSRR14 pKa = 11.84YY15 pKa = 9.07ICACCRR21 pKa = 11.84QEE23 pKa = 4.6VDD25 pKa = 3.97FAQQEE30 pKa = 4.63VCVMLSDD37 pKa = 3.68QLGMLVCRR45 pKa = 11.84SCEE48 pKa = 3.93QSLLPHH54 pKa = 6.6EE55 pKa = 4.88LSDD58 pKa = 5.05AISHH62 pKa = 6.49ACMTEE67 pKa = 3.9VSVSAGFDD75 pKa = 3.37LHH77 pKa = 8.86SDD79 pKa = 3.76DD80 pKa = 5.95SDD82 pKa = 3.65LASYY86 pKa = 11.33SDD88 pKa = 3.23ISDD91 pKa = 3.36WDD93 pKa = 3.92SEE95 pKa = 4.33EE96 pKa = 5.67SPDD99 pKa = 4.08TDD101 pKa = 3.2TDD103 pKa = 3.97FSGSHH108 pKa = 5.86

Molecular weight: 11.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B6RUP5|B6RUP5_9PAPI Putative E4 protein OS=Chelonia mydas papillomavirus 1 OX=485242 GN=E4 PE=4 SV=1
MM1 pKa = 7.42MDD3 pKa = 3.4ANQRR7 pKa = 11.84LMEE10 pKa = 4.12VQNIQLSIIEE20 pKa = 4.32QDD22 pKa = 3.19SHH24 pKa = 5.6TLGSILEE31 pKa = 4.58FYY33 pKa = 10.93KK34 pKa = 10.93AMKK37 pKa = 10.32VEE39 pKa = 3.98YY40 pKa = 9.96LLLAAARR47 pKa = 11.84KK48 pKa = 9.53KK49 pKa = 10.43GRR51 pKa = 11.84LHH53 pKa = 7.37IGVQRR58 pKa = 11.84VPPMQVSEE66 pKa = 4.3TKK68 pKa = 10.33YY69 pKa = 10.38RR70 pKa = 11.84EE71 pKa = 3.92ASTMIVLIEE80 pKa = 4.59SLMQSQFRR88 pKa = 11.84DD89 pKa = 3.27RR90 pKa = 11.84KK91 pKa = 9.66FSLHH95 pKa = 5.72EE96 pKa = 3.95LQYY99 pKa = 10.61SLVMTPPEE107 pKa = 4.1YY108 pKa = 9.85TVKK111 pKa = 10.48QGPKK115 pKa = 9.23QVYY118 pKa = 7.66ITYY121 pKa = 9.99SDD123 pKa = 3.95PSQTTEE129 pKa = 5.15QFTKK133 pKa = 9.77WKK135 pKa = 8.55TILYY139 pKa = 7.98QTDD142 pKa = 3.38DD143 pKa = 3.17WSEE146 pKa = 4.12RR147 pKa = 11.84PSLPGTHH154 pKa = 6.79DD155 pKa = 3.8PKK157 pKa = 10.67WFLAHH162 pKa = 6.76TLTDD166 pKa = 3.51KK167 pKa = 11.42NGLFIVDD174 pKa = 3.51KK175 pKa = 11.34SGDD178 pKa = 3.19KK179 pKa = 10.46DD180 pKa = 3.7YY181 pKa = 11.81YY182 pKa = 11.5AFFSTKK188 pKa = 9.65EE189 pKa = 3.85PSSAVARR196 pKa = 11.84GQWTISSTVPAAAALSRR213 pKa = 11.84QPSPRR218 pKa = 11.84RR219 pKa = 11.84SNSPNLDD226 pKa = 3.13PCTRR230 pKa = 11.84SRR232 pKa = 11.84GSHH235 pKa = 6.37CGGVSPSNPDD245 pKa = 3.35TPDD248 pKa = 3.19TAGVRR253 pKa = 11.84PRR255 pKa = 11.84DD256 pKa = 3.57RR257 pKa = 11.84TGGLGTPPKK266 pKa = 9.77SARR269 pKa = 11.84GGGGRR274 pKa = 11.84GQSTGGSKK282 pKa = 10.19LQRR285 pKa = 11.84GPRR288 pKa = 11.84VTPRR292 pKa = 11.84SSRR295 pKa = 11.84QSKK298 pKa = 9.2EE299 pKa = 3.86KK300 pKa = 11.06NPVSPAEE307 pKa = 3.88VGQNRR312 pKa = 11.84KK313 pKa = 6.56TVSGPGTRR321 pKa = 11.84LDD323 pKa = 3.51RR324 pKa = 11.84LIRR327 pKa = 11.84EE328 pKa = 4.32ARR330 pKa = 11.84DD331 pKa = 3.33PPGVIIEE338 pKa = 4.75GSTSQIKK345 pKa = 9.77HH346 pKa = 4.82LRR348 pKa = 11.84RR349 pKa = 11.84RR350 pKa = 11.84IQLGPLKK357 pKa = 9.73YY358 pKa = 10.59LRR360 pKa = 11.84VTSTWHH366 pKa = 5.73WIVNKK371 pKa = 10.07KK372 pKa = 7.2VQKK375 pKa = 7.36PCKK378 pKa = 8.9MIVVFSNNAEE388 pKa = 3.98RR389 pKa = 11.84QTFLHH394 pKa = 6.71LFRR397 pKa = 11.84VEE399 pKa = 3.76GDD401 pKa = 3.82GISVRR406 pKa = 11.84LCSFNGLL413 pKa = 3.61

Molecular weight: 46.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2268

85

559

324.0

35.92

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.393 ± 0.876

2.381 ± 0.777

6.481 ± 0.642

5.159 ± 0.367

4.145 ± 0.594

6.481 ± 0.57

2.072 ± 0.295

4.409 ± 0.42

4.718 ± 0.677

8.069 ± 0.737

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.94 ± 0.246

3.483 ± 0.766

8.069 ± 1.74

4.056 ± 0.679

5.908 ± 0.643

8.951 ± 0.777

6.834 ± 0.768

6.217 ± 0.514

1.455 ± 0.246

2.778 ± 0.295
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski