Listeria phage LP-101

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Trabyvirinae; Slepowronvirus; Listeria virus LP101

Average proteome isoelectric point is 6.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 70 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A059T5F7|A0A059T5F7_9CAUD Uncharacterized protein OS=Listeria phage LP-101 OX=1458856 GN=LP101_029 PE=4 SV=1
MM1 pKa = 7.8TITTAQRR8 pKa = 11.84KK9 pKa = 8.41YY10 pKa = 10.45NEE12 pKa = 4.21AMHH15 pKa = 6.4EE16 pKa = 4.48FINMVDD22 pKa = 4.21DD23 pKa = 4.66FEE25 pKa = 5.63EE26 pKa = 4.32STPDD30 pKa = 3.28FAKK33 pKa = 10.58EE34 pKa = 3.83VLHH37 pKa = 6.86DD38 pKa = 3.74CDD40 pKa = 3.79YY41 pKa = 11.79VVVTKK46 pKa = 10.72NEE48 pKa = 3.88KK49 pKa = 10.12YY50 pKa = 10.5AVALCTLSTDD60 pKa = 2.97EE61 pKa = 5.77CEE63 pKa = 4.31YY64 pKa = 10.31DD65 pKa = 3.25TNLYY69 pKa = 10.48LDD71 pKa = 4.53EE72 pKa = 5.25KK73 pKa = 10.61LVDD76 pKa = 3.69YY77 pKa = 9.7STVNVNGVTYY87 pKa = 9.56YY88 pKa = 10.6INIVEE93 pKa = 4.5TNDD96 pKa = 3.41IDD98 pKa = 4.28DD99 pKa = 5.11LEE101 pKa = 4.67IATDD105 pKa = 3.74EE106 pKa = 5.5DD107 pKa = 4.21EE108 pKa = 4.55MKK110 pKa = 10.7SDD112 pKa = 3.5NQEE115 pKa = 4.16IILKK119 pKa = 10.28SEE121 pKa = 4.26LKK123 pKa = 10.66

Molecular weight: 14.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A059T7Z9|A0A059T7Z9_9CAUD Uncharacterized protein OS=Listeria phage LP-101 OX=1458856 GN=LP101_051 PE=4 SV=1
MM1 pKa = 7.7RR2 pKa = 11.84GIEE5 pKa = 3.99FRR7 pKa = 11.84GKK9 pKa = 9.6IVGAEE14 pKa = 3.85GFVYY18 pKa = 10.12GKK20 pKa = 10.52LLAPLASGNAYY31 pKa = 9.31IAYY34 pKa = 9.53DD35 pKa = 3.54VNEE38 pKa = 3.74VRR40 pKa = 11.84RR41 pKa = 11.84FSKK44 pKa = 9.55GTYY47 pKa = 9.34AGRR50 pKa = 11.84NTMSATALLNLKK62 pKa = 9.81KK63 pKa = 10.6VSSYY67 pKa = 10.32MCGKK71 pKa = 8.94TSQRR75 pKa = 11.84TCGKK79 pKa = 9.77LLIVLRR85 pKa = 11.84FTVIYY90 pKa = 8.63TKK92 pKa = 10.17IWICWRR98 pKa = 11.84RR99 pKa = 11.84NNGIRR104 pKa = 11.84KK105 pKa = 9.18FKK107 pKa = 10.27ISNRR111 pKa = 11.84GDD113 pKa = 3.02FRR115 pKa = 11.84RR116 pKa = 11.84YY117 pKa = 9.55IFNTYY122 pKa = 8.16FKK124 pKa = 10.08KK125 pKa = 9.6WRR127 pKa = 11.84YY128 pKa = 7.14EE129 pKa = 3.7

Molecular weight: 15.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

70

0

70

13278

36

1639

189.7

21.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.869 ± 0.628

0.859 ± 0.129

6.356 ± 0.281

7.991 ± 0.455

4.398 ± 0.334

6.063 ± 0.478

1.551 ± 0.172

6.853 ± 0.262

9.173 ± 0.389

8.254 ± 0.3

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.342 ± 0.126

6.334 ± 0.192

2.478 ± 0.17

3.382 ± 0.24

3.532 ± 0.283

6.161 ± 0.373

5.859 ± 0.312

6.146 ± 0.239

1.326 ± 0.124

4.074 ± 0.323
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski