Jeotgalibaca dankookensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Jeotgalibaca

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2003 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1S6INU5|A0A1S6INU5_9LACT Elp3 domain-containing protein OS=Jeotgalibaca dankookensis OX=708126 GN=BW727_100818 PE=4 SV=1
MM1 pKa = 7.52KK2 pKa = 9.19KK3 pKa = 8.39TVAILSSVFLLAACQDD19 pKa = 3.83TTDD22 pKa = 3.48ATQEE26 pKa = 4.18SVVNEE31 pKa = 4.16EE32 pKa = 3.98SGQTQVSTVEE42 pKa = 4.35SVEE45 pKa = 4.21SEE47 pKa = 4.14AVSSEE52 pKa = 3.97VQEE55 pKa = 4.36DD56 pKa = 3.67VAYY59 pKa = 9.76EE60 pKa = 3.94YY61 pKa = 10.6EE62 pKa = 4.41INPDD66 pKa = 3.7LYY68 pKa = 10.46TVVPIDD74 pKa = 4.05DD75 pKa = 4.77ADD77 pKa = 4.1TEE79 pKa = 4.76VVLLTFDD86 pKa = 5.9DD87 pKa = 5.19APQPPNSYY95 pKa = 8.39TLDD98 pKa = 3.31IAQTVQDD105 pKa = 4.23KK106 pKa = 10.31GANAIFFVMGQFLEE120 pKa = 4.31EE121 pKa = 4.37PEE123 pKa = 3.98AKK125 pKa = 10.26EE126 pKa = 4.07IIKK129 pKa = 8.96TVYY132 pKa = 11.21DD133 pKa = 3.33MGFEE137 pKa = 4.26IGNHH141 pKa = 5.87SYY143 pKa = 10.76SHH145 pKa = 7.61PDD147 pKa = 3.22LTTLTYY153 pKa = 10.56EE154 pKa = 4.09EE155 pKa = 4.18QLAEE159 pKa = 3.91ITKK162 pKa = 9.97TSDD165 pKa = 2.99LVEE168 pKa = 4.96EE169 pKa = 4.48ITGEE173 pKa = 3.8RR174 pKa = 11.84PRR176 pKa = 11.84FIRR179 pKa = 11.84APYY182 pKa = 9.99GSYY185 pKa = 10.77NSEE188 pKa = 3.9TEE190 pKa = 4.38AIADD194 pKa = 4.07GEE196 pKa = 4.44NMTIMNWTYY205 pKa = 10.84GYY207 pKa = 10.82DD208 pKa = 3.22WVDD211 pKa = 3.34GYY213 pKa = 10.19MEE215 pKa = 4.79EE216 pKa = 5.3DD217 pKa = 4.19AIADD221 pKa = 3.4IMINAPEE228 pKa = 4.72LGSGGNLLMHH238 pKa = 6.89DD239 pKa = 4.28RR240 pKa = 11.84QWTSAAISRR249 pKa = 11.84IIDD252 pKa = 3.46GLRR255 pKa = 11.84DD256 pKa = 3.22AGYY259 pKa = 11.24EE260 pKa = 4.12MVDD263 pKa = 3.4PTLIASPEE271 pKa = 3.98EE272 pKa = 4.01AA273 pKa = 4.22

Molecular weight: 30.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1S6IRL2|A0A1S6IRL2_9LACT Flagellar basal body rod protein FlgB OS=Jeotgalibaca dankookensis OX=708126 GN=flgB PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.6RR3 pKa = 11.84TFQPKK8 pKa = 8.11KK9 pKa = 8.92RR10 pKa = 11.84KK11 pKa = 7.58RR12 pKa = 11.84QRR14 pKa = 11.84VHH16 pKa = 6.34GFRR19 pKa = 11.84KK20 pKa = 10.04RR21 pKa = 11.84MSTKK25 pKa = 10.02NGRR28 pKa = 11.84NVLASRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.73GRR39 pKa = 11.84KK40 pKa = 8.76VLSAA44 pKa = 4.05

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2003

0

2003

623611

29

3192

311.3

34.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.965 ± 0.058

0.49 ± 0.016

5.471 ± 0.045

7.623 ± 0.059

4.461 ± 0.045

6.564 ± 0.048

1.818 ± 0.026

8.082 ± 0.058

6.586 ± 0.043

9.795 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.766 ± 0.027

4.742 ± 0.038

3.429 ± 0.026

3.92 ± 0.034

4.037 ± 0.038

6.077 ± 0.04

5.766 ± 0.035

6.844 ± 0.04

0.834 ± 0.018

3.73 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski