Alphapapillomavirus 9

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A160CDW5|A0A160CDW5_9PAPI Minor capsid protein L2 OS=Alphapapillomavirus 9 OX=337041 GN=L2 PE=3 SV=1
MM1 pKa = 7.49HH2 pKa = 7.91GDD4 pKa = 3.35TPTLHH9 pKa = 7.48EE10 pKa = 4.77YY11 pKa = 10.18MLDD14 pKa = 3.81LQPEE18 pKa = 4.48TTDD21 pKa = 3.68LYY23 pKa = 11.12CYY25 pKa = 9.49EE26 pKa = 4.06QLNDD30 pKa = 3.39SSEE33 pKa = 4.36EE34 pKa = 3.83EE35 pKa = 4.45DD36 pKa = 5.2EE37 pKa = 4.26IDD39 pKa = 4.2GPAGQAEE46 pKa = 4.92PDD48 pKa = 3.3RR49 pKa = 11.84AHH51 pKa = 6.14YY52 pKa = 10.59NIVTFCCKK60 pKa = 9.95CDD62 pKa = 3.19STLRR66 pKa = 11.84LCVQSTHH73 pKa = 5.81VDD75 pKa = 2.76IRR77 pKa = 11.84TLEE80 pKa = 4.3DD81 pKa = 3.76LLIGTLGIVCPICSQKK97 pKa = 10.58PP98 pKa = 3.28

Molecular weight: 11.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A160CDS1|A0A160CDS1_9PAPI Protein E7 OS=Alphapapillomavirus 9 OX=337041 GN=E7 PE=3 SV=1
YYY2 pKa = 9.99YY3 pKa = 10.59LHHH6 pKa = 6.91CLAATKKK13 pKa = 10.63YY14 pKa = 10.42LLKKK18 pKa = 10.66LGSTWPTTPPRR29 pKa = 11.84PIPKKK34 pKa = 9.23SPWAPKKK41 pKa = 8.61KK42 pKa = 9.98HH43 pKa = 6.07RR44 pKa = 11.84LSSDDD49 pKa = 2.89DDD51 pKa = 3.36SQTPEEE57 pKa = 4.0PATPLSCCTEEE68 pKa = 4.29QWTVLQSSLHHH79 pKa = 5.26TAHHH83 pKa = 6.08KKK85 pKa = 10.71DD86 pKa = 3.4LTVIVTLHHH95 pKa = 6.07

Molecular weight: 10.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2419

83

649

302.4

33.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.539 ± 0.43

3.183 ± 0.708

5.705 ± 0.44

4.423 ± 0.639

3.638 ± 0.427

5.581 ± 0.647

2.687 ± 0.64

5.663 ± 0.696

5.539 ± 0.789

8.971 ± 1.016

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.695 ± 0.306

4.506 ± 0.624

6.077 ± 1.2

4.093 ± 0.479

4.299 ± 0.477

7.606 ± 0.624

9.177 ± 1.259

5.87 ± 0.354

1.323 ± 0.344

4.423 ± 0.26
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski