Chryseobacterium sp.

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium; unclassified Chryseobacterium

Average proteome isoelectric point is 6.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3175 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A519LI26|A0A519LI26_9FLAO Restriction endonuclease (Fragment) OS=Chryseobacterium sp. OX=1871047 GN=EOO19_06625 PE=4 SV=1
MM1 pKa = 7.38NEE3 pKa = 3.19SWLQKK8 pKa = 9.2WEE10 pKa = 4.01EE11 pKa = 4.07VKK13 pKa = 10.9DD14 pKa = 3.9VLVCPTDD21 pKa = 3.36LEE23 pKa = 4.98TYY25 pKa = 7.49FTSNEE30 pKa = 3.57ILGQKK35 pKa = 8.89MEE37 pKa = 4.14TMEE40 pKa = 4.62IGNVSLPSGKK50 pKa = 9.48IVVRR54 pKa = 11.84DD55 pKa = 3.49PLVYY59 pKa = 10.59LSSDD63 pKa = 3.31EE64 pKa = 4.1KK65 pKa = 10.95PYY67 pKa = 10.59FIQAPKK73 pKa = 11.1GNFLVTIAVVKK84 pKa = 10.92SEE86 pKa = 4.12DD87 pKa = 3.02WGDD90 pKa = 3.2RR91 pKa = 11.84YY92 pKa = 11.02AVVKK96 pKa = 10.33VQFTQKK102 pKa = 10.38KK103 pKa = 7.31PVVYY107 pKa = 10.09RR108 pKa = 11.84EE109 pKa = 3.98ALIGIEE115 pKa = 4.13DD116 pKa = 4.29LEE118 pKa = 5.15DD119 pKa = 3.35VTEE122 pKa = 4.74DD123 pKa = 3.63DD124 pKa = 4.57FFGFSVDD131 pKa = 4.21AGLGCITDD139 pKa = 4.17AEE141 pKa = 4.47VLPSVDD147 pKa = 3.26QFVAATDD154 pKa = 3.41VDD156 pKa = 4.11NVYY159 pKa = 11.28DD160 pKa = 4.54DD161 pKa = 4.1YY162 pKa = 11.27FAEE165 pKa = 5.16IFAQSYY171 pKa = 10.11KK172 pKa = 10.74DD173 pKa = 3.41HH174 pKa = 7.47PNNQRR179 pKa = 11.84DD180 pKa = 3.45AGDD183 pKa = 4.08WINWTVPNTDD193 pKa = 3.05YY194 pKa = 10.66QIPMFASGFGDD205 pKa = 3.74GSYY208 pKa = 10.54PVYY211 pKa = 10.07FAYY214 pKa = 10.21DD215 pKa = 3.32AHH217 pKa = 8.6GEE219 pKa = 3.97ICGLYY224 pKa = 9.45IQFIDD229 pKa = 3.8VEE231 pKa = 4.31LALTEE236 pKa = 5.24DD237 pKa = 4.46GDD239 pKa = 4.84DD240 pKa = 4.04EE241 pKa = 5.17DD242 pKa = 5.56VEE244 pKa = 4.43

Molecular weight: 27.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A519KY54|A0A519KY54_9FLAO Non-ribosomal peptide synthetase (Fragment) OS=Chryseobacterium sp. OX=1871047 GN=EOO19_14150 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPSEE10 pKa = 3.59RR11 pKa = 11.84KK12 pKa = 9.33RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 10.03HH17 pKa = 3.97GFRR20 pKa = 11.84EE21 pKa = 4.33RR22 pKa = 11.84MSTPNGRR29 pKa = 11.84RR30 pKa = 11.84VLAARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.98GRR40 pKa = 11.84KK41 pKa = 8.8SLTVSAQRR49 pKa = 11.84AKK51 pKa = 10.68RR52 pKa = 3.52

Molecular weight: 6.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3175

0

3175

888173

23

1977

279.7

31.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.965 ± 0.042

0.74 ± 0.013

5.608 ± 0.031

7.134 ± 0.053

5.527 ± 0.033

5.916 ± 0.042

1.744 ± 0.021

7.992 ± 0.039

8.727 ± 0.045

9.108 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.271 ± 0.02

6.339 ± 0.046

3.294 ± 0.027

3.598 ± 0.026

3.268 ± 0.028

6.597 ± 0.036

5.299 ± 0.036

5.842 ± 0.03

1.052 ± 0.015

3.981 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski