Lynx canadensis faeces associated genomovirus CL4 128

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; unclassified Genomoviridae

Average proteome isoelectric point is 7.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5CL64|A0A2Z5CL64_9VIRU Capsid protein OS=Lynx canadensis faeces associated genomovirus CL4 128 OX=2219130 PE=4 SV=1
MM1 pKa = 7.89PSFHH5 pKa = 6.86LKK7 pKa = 8.75NRR9 pKa = 11.84RR10 pKa = 11.84YY11 pKa = 10.69VLFTYY16 pKa = 10.13AQAGTDD22 pKa = 3.68FDD24 pKa = 3.84YY25 pKa = 10.81WAVVDD30 pKa = 4.77LLGGLGAEE38 pKa = 4.56CIIGRR43 pKa = 11.84EE44 pKa = 4.04SHH46 pKa = 6.91ADD48 pKa = 3.34GGIHH52 pKa = 5.69FHH54 pKa = 6.29VFADD58 pKa = 4.61FGRR61 pKa = 11.84LFSRR65 pKa = 11.84KK66 pKa = 7.46TDD68 pKa = 3.54LFDD71 pKa = 4.53VGGKK75 pKa = 9.29HH76 pKa = 6.83PNIQPIGRR84 pKa = 11.84TPAKK88 pKa = 10.3AYY90 pKa = 10.39DD91 pKa = 3.93YY92 pKa = 10.86ACKK95 pKa = 10.72DD96 pKa = 3.23GDD98 pKa = 4.09VVAGGLGRR106 pKa = 11.84PGGDD110 pKa = 3.43ADD112 pKa = 4.94FDD114 pKa = 4.67PDD116 pKa = 4.67SFWDD120 pKa = 3.7SATHH124 pKa = 6.59CGSADD129 pKa = 3.65EE130 pKa = 4.98FLHH133 pKa = 7.02FCDD136 pKa = 4.14QLAPRR141 pKa = 11.84DD142 pKa = 4.09LIRR145 pKa = 11.84GFPAFRR151 pKa = 11.84SYY153 pKa = 11.85SNWKK157 pKa = 8.65WNDD160 pKa = 2.56GSLVYY165 pKa = 10.17NQPDD169 pKa = 3.4GVEE172 pKa = 4.29FDD174 pKa = 3.38TSAAEE179 pKa = 4.92GIDD182 pKa = 3.48EE183 pKa = 4.26RR184 pKa = 11.84RR185 pKa = 11.84SLVLFGPYY193 pKa = 10.43GCGKK197 pKa = 5.65TTWARR202 pKa = 11.84SLGEE206 pKa = 4.02HH207 pKa = 6.89IYY209 pKa = 10.68FGSQWSGKK217 pKa = 7.76VAFQGLEE224 pKa = 3.77KK225 pKa = 10.81AEE227 pKa = 3.85YY228 pKa = 10.37AIFDD232 pKa = 3.71DD233 pKa = 3.95WKK235 pKa = 10.84GGLKK239 pKa = 9.14MLPGYY244 pKa = 10.21KK245 pKa = 9.65DD246 pKa = 2.9WLGAQWHH253 pKa = 5.04VSVRR257 pKa = 11.84QLHH260 pKa = 6.14HH261 pKa = 7.14DD262 pKa = 3.37ARR264 pKa = 11.84LEE266 pKa = 3.93EE267 pKa = 4.12WGRR270 pKa = 11.84PCIWLCNTDD279 pKa = 3.88PRR281 pKa = 11.84VMTHH285 pKa = 6.19VNDD288 pKa = 3.84DD289 pKa = 4.22TDD291 pKa = 3.91WTWMDD296 pKa = 3.94RR297 pKa = 11.84ACIFVEE303 pKa = 4.35VTGALATFRR312 pKa = 11.84ANTVV316 pKa = 2.82

Molecular weight: 35.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5CL64|A0A2Z5CL64_9VIRU Capsid protein OS=Lynx canadensis faeces associated genomovirus CL4 128 OX=2219130 PE=4 SV=1
MM1 pKa = 7.79AYY3 pKa = 10.19ARR5 pKa = 11.84RR6 pKa = 11.84LRR8 pKa = 11.84RR9 pKa = 11.84PAYY12 pKa = 8.89RR13 pKa = 11.84KK14 pKa = 9.29KK15 pKa = 10.21AARR18 pKa = 11.84STRR21 pKa = 11.84RR22 pKa = 11.84YY23 pKa = 9.73SKK25 pKa = 10.25RR26 pKa = 11.84SYY28 pKa = 10.02PRR30 pKa = 11.84SSYY33 pKa = 9.91VKK35 pKa = 9.42KK36 pKa = 10.07RR37 pKa = 11.84PYY39 pKa = 9.53RR40 pKa = 11.84KK41 pKa = 9.95RR42 pKa = 11.84MTKK45 pKa = 10.34KK46 pKa = 10.35SILNVTSRR54 pKa = 11.84KK55 pKa = 9.78KK56 pKa = 10.11RR57 pKa = 11.84DD58 pKa = 2.95TMAYY62 pKa = 6.99YY63 pKa = 9.89TNSSATSQTGSTTYY77 pKa = 10.47VQDD80 pKa = 3.47AAVVTGGSSVPACFLWCATGRR101 pKa = 11.84DD102 pKa = 4.19YY103 pKa = 8.2TTSNAGTNGQIEE115 pKa = 4.5DD116 pKa = 3.92SATRR120 pKa = 11.84TAQSCYY126 pKa = 8.33MRR128 pKa = 11.84GLKK131 pKa = 9.53EE132 pKa = 3.77ALEE135 pKa = 4.24VQVADD140 pKa = 3.84GLPWQWRR147 pKa = 11.84RR148 pKa = 11.84ICFTAKK154 pKa = 10.43GLQTLFASTTGFSLVIEE171 pKa = 4.78ASTGFQRR178 pKa = 11.84VLNQVPGDD186 pKa = 3.81SGSPNSLRR194 pKa = 11.84AIIEE198 pKa = 4.1TLLFRR203 pKa = 11.84GVYY206 pKa = 9.56LRR208 pKa = 11.84DD209 pKa = 3.61WIDD212 pKa = 3.32PMTAKK217 pKa = 9.84TDD219 pKa = 3.56NDD221 pKa = 3.91RR222 pKa = 11.84LTIKK226 pKa = 10.27YY227 pKa = 9.88DD228 pKa = 3.3KK229 pKa = 9.82TISIASGNEE238 pKa = 3.73DD239 pKa = 3.32GCIRR243 pKa = 11.84SYY245 pKa = 11.15KK246 pKa = 9.46RR247 pKa = 11.84WHH249 pKa = 6.44GMNKK253 pKa = 9.84SLVYY257 pKa = 10.78NDD259 pKa = 4.86DD260 pKa = 3.47EE261 pKa = 5.39SGGTKK266 pKa = 10.0VPAFYY271 pKa = 9.7STLGKK276 pKa = 10.56AGMGDD281 pKa = 4.59FYY283 pKa = 11.76VMDD286 pKa = 4.04YY287 pKa = 10.14FRR289 pKa = 11.84PRR291 pKa = 11.84AGSTSSNQLRR301 pKa = 11.84VAASSTLYY309 pKa = 9.44WHH311 pKa = 7.06EE312 pKa = 4.1KK313 pKa = 9.32

Molecular weight: 35.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

629

313

316

314.5

35.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.585 ± 0.031

2.067 ± 0.352

7.472 ± 1.77

3.18 ± 0.468

4.769 ± 1.42

9.221 ± 1.404

2.226 ± 1.19

3.498 ± 0.013

5.087 ± 0.977

6.677 ± 0.455

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.908 ± 0.486

3.021 ± 0.37

3.657 ± 0.346

2.862 ± 0.25

7.79 ± 1.346

7.631 ± 2.184

7.154 ± 1.823

5.405 ± 0.22

3.021 ± 0.828

4.769 ± 0.975
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski