Trichoplusia ni (Cabbage looper)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Endopterygota; Amphiesmenoptera; Lepidoptera; Glossata; Neolepidoptera; Heteroneura; Ditrysia;

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 20889 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7E5WB14|A0A7E5WB14_TRINI pickpocket protein 28 OS=Trichoplusia ni OX=7111 GN=LOC113500897 PE=3 SV=1
MM1 pKa = 7.94RR2 pKa = 11.84SNNTVTDD9 pKa = 3.97SIYY12 pKa = 10.55AYY14 pKa = 10.64FNILSKK20 pKa = 10.77HH21 pKa = 5.59FSQINYY27 pKa = 9.57YY28 pKa = 8.82FICPQIFAYY37 pKa = 9.6FSWWEE42 pKa = 4.02TKK44 pKa = 10.21AIPVPDD50 pKa = 4.75PSASIPSLTTTSTPTTCATDD70 pKa = 3.21STTTSEE76 pKa = 4.19PTTTSDD82 pKa = 4.44SEE84 pKa = 4.61STTEE88 pKa = 5.17AVTTPDD94 pKa = 3.46PQQTTEE100 pKa = 4.04EE101 pKa = 4.52TTTTSPDD108 pKa = 3.18NSPNTTDD115 pKa = 2.87TTTTLDD121 pKa = 3.72PKK123 pKa = 11.41DD124 pKa = 3.65NTTEE128 pKa = 4.07STTTTNEE135 pKa = 4.03TTPEE139 pKa = 4.13TTKK142 pKa = 8.48TTTEE146 pKa = 3.7ATTCNPEE153 pKa = 4.0EE154 pKa = 4.28TTTAATSTTPDD165 pKa = 3.17ANATTEE171 pKa = 4.15PPSTADD177 pKa = 3.1ATATGSTATTPNYY190 pKa = 10.71SDD192 pKa = 3.3TTTEE196 pKa = 4.07TSVNTTDD203 pKa = 3.08STTNKK208 pKa = 10.2PEE210 pKa = 4.17DD211 pKa = 3.62TSTEE215 pKa = 3.75ATATSTEE222 pKa = 4.23SGTTTGATPCSSDD235 pKa = 3.17ATDD238 pKa = 3.45TTTVASATTTGTTPSSSNVTDD259 pKa = 3.59TTLSSATTTEE269 pKa = 3.86SSTDD273 pKa = 3.34SSATPCSSDD282 pKa = 2.88TTTDD286 pKa = 3.17STVTTTSASPCDD298 pKa = 3.98IIEE301 pKa = 4.29TTTDD305 pKa = 2.84SSATTTSTTPCSSDD319 pKa = 3.06AVEE322 pKa = 4.48TTTEE326 pKa = 3.8ASPNITSSPPSATDD340 pKa = 3.18PTEE343 pKa = 3.87PTTDD347 pKa = 3.41SNASTTSATPCSNDD361 pKa = 3.13TTEE364 pKa = 4.29TTPEE368 pKa = 3.95SSLTTTNAAPRR379 pKa = 11.84LTDD382 pKa = 3.43TAEE385 pKa = 4.08TTTDD389 pKa = 2.98SSATTTSATSCSSDD403 pKa = 3.04ASKK406 pKa = 8.09TTTDD410 pKa = 4.13SIATTISAAPCVTDD424 pKa = 3.56TKK426 pKa = 10.64EE427 pKa = 4.03TTTDD431 pKa = 3.14SSATTATATSSEE443 pKa = 4.02YY444 pKa = 10.9DD445 pKa = 3.26ATEE448 pKa = 3.81KK449 pKa = 8.26TTEE452 pKa = 4.13SGVTTTDD459 pKa = 2.97ATPCLSNATQTTTTSTARR477 pKa = 11.84TTDD480 pKa = 3.34ATPCSSDD487 pKa = 3.06ATEE490 pKa = 4.14TTTDD494 pKa = 3.02SSAITTDD501 pKa = 3.26ATPCASDD508 pKa = 3.26ATEE511 pKa = 4.09TTTDD515 pKa = 3.02SSAITTDD522 pKa = 3.12ATPYY526 pKa = 10.97ASDD529 pKa = 3.41ATEE532 pKa = 4.05TTTDD536 pKa = 3.02SSAITTDD543 pKa = 3.26ATPCASDD550 pKa = 3.26ATEE553 pKa = 4.09TTTDD557 pKa = 3.15SSATTTDD564 pKa = 2.96ATPCVSDD571 pKa = 3.46ATEE574 pKa = 4.07TTTDD578 pKa = 3.02SSAITTDD585 pKa = 3.26ATPCASDD592 pKa = 3.26ATEE595 pKa = 4.09TTTDD599 pKa = 3.02SSAITTDD606 pKa = 3.26ATPCASDD613 pKa = 3.32ATEE616 pKa = 3.9TATDD620 pKa = 3.69SSATPTDD627 pKa = 3.62ATPCASDD634 pKa = 3.26ATEE637 pKa = 4.09TTTDD641 pKa = 3.02SSAITTDD648 pKa = 3.26ATPCASDD655 pKa = 3.26ATEE658 pKa = 4.09TTTDD662 pKa = 3.02SSAITTDD669 pKa = 3.26ATPCASDD676 pKa = 3.32ATEE679 pKa = 3.9TATDD683 pKa = 3.67SSATTTDD690 pKa = 3.11ATPCASAATEE700 pKa = 4.31AEE702 pKa = 4.25SDD704 pKa = 3.84STTDD708 pKa = 3.14ATPRR712 pKa = 11.84ASNGDD717 pKa = 3.41TRR719 pKa = 11.84SATSYY724 pKa = 9.92YY725 pKa = 10.37RR726 pKa = 11.84PVGNRR731 pKa = 11.84GNKK734 pKa = 9.23LNHH737 pKa = 6.63ILSKK741 pKa = 10.14PVKK744 pKa = 10.21SLVKK748 pKa = 9.86KK749 pKa = 10.25LRR751 pKa = 11.84PILVFLKK758 pKa = 10.49HH759 pKa = 6.19LSSLLLLFCVQSSPIEE775 pKa = 4.15VKK777 pKa = 9.69MKK779 pKa = 10.49SYY781 pKa = 9.44TLILLVLSCLLVFPSDD797 pKa = 3.68QSALPDD803 pKa = 3.92ASPCFLGPAFYY814 pKa = 9.79PRR816 pKa = 11.84HH817 pKa = 6.1RR818 pKa = 11.84EE819 pKa = 3.65RR820 pKa = 11.84HH821 pKa = 5.47RR822 pKa = 11.84STTTPSTTTSSTSSTSSTTTSTTTSTTSSPQRR854 pKa = 11.84RR855 pKa = 11.84RR856 pKa = 11.84WRR858 pKa = 11.84RR859 pKa = 11.84RR860 pKa = 11.84WFNPFYY866 pKa = 10.05WWWLL870 pKa = 3.45

Molecular weight: 89.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7E5VNM7|A0A7E5VNM7_TRINI CREB-regulated transcription coactivator 2-like isoform X1 OS=Trichoplusia ni OX=7111 GN=LOC113495410 PE=3 SV=1
MM1 pKa = 7.67ASSKK5 pKa = 9.45TLFILGVLLALVATTFAQNRR25 pKa = 11.84GRR27 pKa = 11.84GGFGGPGGFGGPGGNRR43 pKa = 11.84PGGNRR48 pKa = 11.84PGGGFGGGNNGFGQGGFGQGGFGGGNNGFGPGGFGGGNNGFGQGGFGGNRR98 pKa = 11.84PGGFGGPGGFGGPGGFGRR116 pKa = 11.84PGFGRR121 pKa = 3.64

Molecular weight: 11.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

14669

6220

20889

13497636

34

20773

646.2

72.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.39 ± 0.027

1.879 ± 0.025

5.628 ± 0.012

6.902 ± 0.033

3.293 ± 0.014

5.655 ± 0.027

2.51 ± 0.009

4.969 ± 0.019

6.353 ± 0.03

8.761 ± 0.029

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.165 ± 0.01

4.53 ± 0.017

5.825 ± 0.026

4.156 ± 0.021

5.733 ± 0.021

7.782 ± 0.022

6.081 ± 0.041

6.324 ± 0.019

1.052 ± 0.007

3.009 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski