Cylindrobasidium torrendii FP15055 ss-10

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Physalacriaceae; Cylindrobasidium; Cylindrobasidium torrendii

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13901 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D7BB58|A0A0D7BB58_9AGAR Uncharacterized protein OS=Cylindrobasidium torrendii FP15055 ss-10 OX=1314674 GN=CYLTODRAFT_454512 PE=4 SV=1
MM1 pKa = 7.17FALAALSLTVLPFVSADD18 pKa = 3.48TALDD22 pKa = 3.6LAGIKK27 pKa = 10.15AHH29 pKa = 6.02FTQSKK34 pKa = 9.54IVPDD38 pKa = 4.1LFEE41 pKa = 4.59SFNPEE46 pKa = 3.03AVLTVNFPGVGDD58 pKa = 3.72ITPGQTLTQAEE69 pKa = 4.31AGGYY73 pKa = 9.54PSIKK77 pKa = 8.77VTAANSSVDD86 pKa = 3.58LGSTFTVAMVDD97 pKa = 3.33ASYY100 pKa = 11.23VGQDD104 pKa = 3.43DD105 pKa = 5.55DD106 pKa = 5.19DD107 pKa = 4.31VTRR110 pKa = 11.84HH111 pKa = 5.15WLMNGCTLSDD121 pKa = 3.48GTISNSSATSITEE134 pKa = 3.96YY135 pKa = 10.72GGPAPPEE142 pKa = 4.11GEE144 pKa = 3.76PAHH147 pKa = 6.66RR148 pKa = 11.84YY149 pKa = 9.2VIAVYY154 pKa = 8.16QQPDD158 pKa = 3.63SFSAPEE164 pKa = 4.44GFNQANMGISTFDD177 pKa = 3.47FEE179 pKa = 6.83DD180 pKa = 3.91YY181 pKa = 9.67LTNSKK186 pKa = 10.54LGALVGATYY195 pKa = 7.7MTVQTGEE202 pKa = 3.86ATTSVEE208 pKa = 4.1ATSSVDD214 pKa = 3.49SQTLSAASQTGSSSSGASATTGASGSSSSGAPDD247 pKa = 3.49GASALTASSAAVALGFLGFLFAA269 pKa = 6.43

Molecular weight: 27.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D7B3P3|A0A0D7B3P3_9AGAR Ribosomal protein OS=Cylindrobasidium torrendii FP15055 ss-10 OX=1314674 GN=CYLTODRAFT_456859 PE=3 SV=1
CC1 pKa = 7.47LLAKK5 pKa = 10.53LLLRR9 pKa = 11.84TPTSPRR15 pKa = 11.84VVLRR19 pKa = 11.84ASRR22 pKa = 11.84SSRR25 pKa = 11.84SQLKK29 pKa = 10.05SPRR32 pKa = 11.84RR33 pKa = 11.84PPRR36 pKa = 11.84NPAPKK41 pKa = 10.16KK42 pKa = 9.71PIRR45 pKa = 11.84LRR47 pKa = 11.84TARR50 pKa = 11.84RR51 pKa = 11.84KK52 pKa = 9.25PRR54 pKa = 11.84NLRR57 pKa = 11.84ARR59 pKa = 11.84SARR62 pKa = 11.84LLKK65 pKa = 9.92TLTKK69 pKa = 9.7PPSPRR74 pKa = 11.84RR75 pKa = 11.84PNPPAKK81 pKa = 9.98RR82 pKa = 11.84SLLPRR87 pKa = 11.84QSPPARR93 pKa = 11.84LSQRR97 pKa = 11.84PRR99 pKa = 11.84QHH101 pKa = 4.75QHH103 pKa = 6.22RR104 pKa = 11.84SLHH107 pKa = 5.82PALLRR112 pKa = 11.84PSQRR116 pKa = 11.84LVLLLSQRR124 pKa = 11.84LGLRR128 pKa = 11.84QQSLPLVPPPRR139 pKa = 11.84NLHH142 pKa = 5.96RR143 pKa = 11.84ALGPRR148 pKa = 11.84SRR150 pKa = 11.84HH151 pKa = 5.15PRR153 pKa = 11.84LVRR156 pKa = 11.84PPLPLLRR163 pKa = 11.84PPPRR167 pKa = 11.84RR168 pKa = 11.84QSLKK172 pKa = 10.59SRR174 pKa = 11.84NPLKK178 pKa = 9.71KK179 pKa = 8.88TKK181 pKa = 9.98LRR183 pKa = 11.84PPLKK187 pKa = 8.14TRR189 pKa = 11.84PRR191 pKa = 11.84RR192 pKa = 11.84RR193 pKa = 11.84CPRR196 pKa = 11.84RR197 pKa = 11.84RR198 pKa = 11.84KK199 pKa = 9.56PEE201 pKa = 3.76NGRR204 pKa = 11.84GWWAIGYY211 pKa = 9.39RR212 pKa = 11.84LL213 pKa = 3.88

Molecular weight: 24.87 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13892

9

13901

5747761

50

4803

413.5

45.76

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.91 ± 0.019

1.314 ± 0.009

5.796 ± 0.016

5.907 ± 0.02

3.737 ± 0.013

6.414 ± 0.021

2.523 ± 0.008

4.729 ± 0.014

4.558 ± 0.019

9.116 ± 0.025

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.234 ± 0.008

3.378 ± 0.011

6.436 ± 0.03

3.644 ± 0.013

6.276 ± 0.018

8.307 ± 0.026

6.073 ± 0.012

6.398 ± 0.014

1.509 ± 0.009

2.741 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski