Capybara microvirus Cap1_SP_192

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W5E4|A0A4P8W5E4_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_192 OX=2585407 PE=4 SV=1
MM1 pKa = 7.95LYY3 pKa = 10.25QLYY6 pKa = 10.3SVHH9 pKa = 7.67DD10 pKa = 4.27DD11 pKa = 3.33VANLYY16 pKa = 9.22FPPVCEE22 pKa = 4.05RR23 pKa = 11.84NEE25 pKa = 3.85VSAKK29 pKa = 10.51RR30 pKa = 11.84NFEE33 pKa = 3.88VSMLTSNPQIPNFNKK48 pKa = 10.09DD49 pKa = 3.14DD50 pKa = 3.67YY51 pKa = 11.52SLYY54 pKa = 10.71FVGSFDD60 pKa = 5.6DD61 pKa = 3.72EE62 pKa = 4.94FGDD65 pKa = 4.34VVSTPKK71 pKa = 10.4PNLVLRR77 pKa = 11.84GLDD80 pKa = 3.3CVLRR84 pKa = 11.84QHH86 pKa = 6.9SYY88 pKa = 11.45FEE90 pKa = 4.81GGSDD94 pKa = 4.99DD95 pKa = 5.99LPDD98 pKa = 3.23

Molecular weight: 11.2 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V1FVQ9|A0A4V1FVQ9_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_192 OX=2585407 PE=4 SV=1
MM1 pKa = 5.88VHH3 pKa = 6.08GRR5 pKa = 11.84IFFLIFLAILVMLPRR20 pKa = 11.84IGEE23 pKa = 4.24KK24 pKa = 10.24LVSFSPSRR32 pKa = 11.84SCKK35 pKa = 9.34FVKK38 pKa = 9.63TRR40 pKa = 11.84ARR42 pKa = 11.84LCRR45 pKa = 11.84ARR47 pKa = 11.84LSFYY51 pKa = 10.4DD52 pKa = 5.1LKK54 pKa = 10.66RR55 pKa = 11.84TSCKK59 pKa = 9.94RR60 pKa = 11.84GLIPRR65 pKa = 11.84AQPSAFSLDD74 pKa = 3.2INALGDD80 pKa = 3.63RR81 pKa = 11.84LL82 pKa = 3.69

Molecular weight: 9.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1503

82

590

250.5

28.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.585 ± 1.996

1.198 ± 0.365

7.119 ± 0.806

4.657 ± 0.816

5.655 ± 0.945

5.988 ± 0.42

1.929 ± 0.379

4.524 ± 0.679

4.192 ± 0.778

8.25 ± 0.714

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.863 ± 0.225

5.522 ± 0.739

5.057 ± 0.663

3.393 ± 0.455

5.389 ± 0.858

9.914 ± 0.759

4.857 ± 0.642

6.055 ± 0.731

0.998 ± 0.3

5.855 ± 0.92
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski