Amino acid dipepetide frequency for Mink circovirus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.824AlaAla: 3.824 ± 0.395
0.0AlaCys: 0.0 ± 0.0
0.0AlaAsp: 0.0 ± 0.0
0.0AlaGlu: 0.0 ± 0.0
0.0AlaPhe: 0.0 ± 0.0
5.736AlaGly: 5.736 ± 3.83
3.824AlaHis: 3.824 ± 2.553
3.824AlaIle: 3.824 ± 0.395
1.912AlaLys: 1.912 ± 1.277
3.824AlaLeu: 3.824 ± 2.553
0.0AlaMet: 0.0 ± 0.0
3.824AlaAsn: 3.824 ± 0.395
0.0AlaPro: 0.0 ± 0.0
1.912AlaGln: 1.912 ± 1.277
7.648AlaArg: 7.648 ± 0.789
1.912AlaSer: 1.912 ± 1.671
1.912AlaThr: 1.912 ± 1.671
5.736AlaVal: 5.736 ± 3.83
1.912AlaTrp: 1.912 ± 1.277
1.912AlaTyr: 1.912 ± 1.671
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
1.912CysAsp: 1.912 ± 1.277
0.0CysGlu: 0.0 ± 0.0
1.912CysPhe: 1.912 ± 1.277
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
1.912CysLys: 1.912 ± 1.277
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.912CysAsn: 1.912 ± 1.277
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
1.912CysSer: 1.912 ± 1.277
0.0CysThr: 0.0 ± 0.0
3.824CysVal: 3.824 ± 0.395
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.912AspAla: 1.912 ± 1.277
0.0AspCys: 0.0 ± 0.0
3.824AspAsp: 3.824 ± 2.553
1.912AspGlu: 1.912 ± 1.277
1.912AspPhe: 1.912 ± 1.277
3.824AspGly: 3.824 ± 0.395
0.0AspHis: 0.0 ± 0.0
0.0AspIle: 0.0 ± 0.0
0.0AspLys: 0.0 ± 0.0
7.648AspLeu: 7.648 ± 2.159
0.0AspMet: 0.0 ± 0.0
3.824AspAsn: 3.824 ± 2.553
1.912AspPro: 1.912 ± 1.671
0.0AspGln: 0.0 ± 0.0
3.824AspArg: 3.824 ± 0.395
0.0AspSer: 0.0 ± 0.0
0.0AspThr: 0.0 ± 0.0
3.824AspVal: 3.824 ± 2.553
1.912AspTrp: 1.912 ± 1.277
5.736AspTyr: 5.736 ± 0.882
0.0AspXaa: 0.0 ± 0.0
Glu
5.736GluAla: 5.736 ± 3.83
0.0GluCys: 0.0 ± 0.0
1.912GluAsp: 1.912 ± 1.277
3.824GluGlu: 3.824 ± 0.395
7.648GluPhe: 7.648 ± 0.789
1.912GluGly: 1.912 ± 1.671
0.0GluHis: 0.0 ± 0.0
0.0GluIle: 0.0 ± 0.0
0.0GluLys: 0.0 ± 0.0
3.824GluLeu: 3.824 ± 2.553
0.0GluMet: 0.0 ± 0.0
1.912GluAsn: 1.912 ± 1.277
3.824GluPro: 3.824 ± 2.553
1.912GluGln: 1.912 ± 1.277
0.0GluArg: 0.0 ± 0.0
1.912GluSer: 1.912 ± 1.277
7.648GluThr: 7.648 ± 2.159
5.736GluVal: 5.736 ± 3.83
1.912GluTrp: 1.912 ± 1.671
0.0GluTyr: 0.0 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
0.0PheAla: 0.0 ± 0.0
1.912PheCys: 1.912 ± 1.277
1.912PheAsp: 1.912 ± 1.671
1.912PheGlu: 1.912 ± 1.277
0.0PhePhe: 0.0 ± 0.0
0.0PheGly: 0.0 ± 0.0
0.0PheHis: 0.0 ± 0.0
3.824PheIle: 3.824 ± 0.395
1.912PheLys: 1.912 ± 1.277
3.824PheLeu: 3.824 ± 0.395
0.0PheMet: 0.0 ± 0.0
1.912PheAsn: 1.912 ± 1.671
1.912PhePro: 1.912 ± 1.671
1.912PheGln: 1.912 ± 1.671
1.912PheArg: 1.912 ± 1.671
1.912PheSer: 1.912 ± 1.671
3.824PheThr: 3.824 ± 0.395
1.912PheVal: 1.912 ± 1.277
0.0PheTrp: 0.0 ± 0.0
1.912PheTyr: 1.912 ± 1.277
0.0PheXaa: 0.0 ± 0.0
Gly
0.0GlyAla: 0.0 ± 0.0
0.0GlyCys: 0.0 ± 0.0
5.736GlyAsp: 5.736 ± 0.882
7.648GlyGlu: 7.648 ± 5.107
1.912GlyPhe: 1.912 ± 1.277
13.384GlyGly: 13.384 ± 3.041
3.824GlyHis: 3.824 ± 0.395
3.824GlyIle: 3.824 ± 3.342
9.56GlyLys: 9.56 ± 3.435
5.736GlyLeu: 5.736 ± 0.882
1.912GlyMet: 1.912 ± 1.671
0.0GlyAsn: 0.0 ± 0.0
5.736GlyPro: 5.736 ± 2.066
1.912GlyGln: 1.912 ± 1.277
3.824GlyArg: 3.824 ± 2.553
0.0GlySer: 0.0 ± 0.0
11.472GlyThr: 11.472 ± 1.764
1.912GlyVal: 1.912 ± 1.277
1.912GlyTrp: 1.912 ± 1.277
3.824GlyTyr: 3.824 ± 0.395
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
0.0HisGlu: 0.0 ± 0.0
0.0HisPhe: 0.0 ± 0.0
1.912HisGly: 1.912 ± 1.671
1.912HisHis: 1.912 ± 1.671
1.912HisIle: 1.912 ± 1.277
0.0HisLys: 0.0 ± 0.0
1.912HisLeu: 1.912 ± 1.277
0.0HisMet: 0.0 ± 0.0
1.912HisAsn: 1.912 ± 1.671
3.824HisPro: 3.824 ± 2.553
0.0HisGln: 0.0 ± 0.0
1.912HisArg: 1.912 ± 1.671
5.736HisSer: 5.736 ± 5.014
0.0HisThr: 0.0 ± 0.0
7.648HisVal: 7.648 ± 2.159
0.0HisTrp: 0.0 ± 0.0
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
0.0IleAla: 0.0 ± 0.0
0.0IleCys: 0.0 ± 0.0
0.0IleAsp: 0.0 ± 0.0
3.824IleGlu: 3.824 ± 0.395
1.912IlePhe: 1.912 ± 1.671
3.824IleGly: 3.824 ± 0.395
1.912IleHis: 1.912 ± 1.671
1.912IleIle: 1.912 ± 1.671
0.0IleLys: 0.0 ± 0.0
1.912IleLeu: 1.912 ± 1.671
1.912IleMet: 1.912 ± 1.277
3.824IleAsn: 3.824 ± 2.553
0.0IlePro: 0.0 ± 0.0
5.736IleGln: 5.736 ± 2.066
5.736IleArg: 5.736 ± 2.066
5.736IleSer: 5.736 ± 5.014
3.824IleThr: 3.824 ± 0.395
1.912IleVal: 1.912 ± 1.277
1.912IleTrp: 1.912 ± 1.277
0.0IleTyr: 0.0 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
0.0LysAla: 0.0 ± 0.0
0.0LysCys: 0.0 ± 0.0
1.912LysAsp: 1.912 ± 1.277
5.736LysGlu: 5.736 ± 3.83
0.0LysPhe: 0.0 ± 0.0
5.736LysGly: 5.736 ± 0.882
0.0LysHis: 0.0 ± 0.0
3.824LysIle: 3.824 ± 0.395
3.824LysLys: 3.824 ± 2.553
1.912LysLeu: 1.912 ± 1.671
1.912LysMet: 1.912 ± 1.277
5.736LysAsn: 5.736 ± 5.014
5.736LysPro: 5.736 ± 0.882
5.736LysGln: 5.736 ± 2.066
7.648LysArg: 7.648 ± 5.107
3.824LysSer: 3.824 ± 0.395
3.824LysThr: 3.824 ± 0.395
3.824LysVal: 3.824 ± 2.553
1.912LysTrp: 1.912 ± 1.277
0.0LysTyr: 0.0 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
1.912LeuAla: 1.912 ± 1.671
1.912LeuCys: 1.912 ± 1.277
3.824LeuAsp: 3.824 ± 0.395
1.912LeuGlu: 1.912 ± 1.277
0.0LeuPhe: 0.0 ± 0.0
0.0LeuGly: 0.0 ± 0.0
0.0LeuHis: 0.0 ± 0.0
0.0LeuIle: 0.0 ± 0.0
9.56LeuLys: 9.56 ± 0.488
7.648LeuLeu: 7.648 ± 5.107
0.0LeuMet: 0.0 ± 0.0
1.912LeuAsn: 1.912 ± 1.277
5.736LeuPro: 5.736 ± 0.882
7.648LeuGln: 7.648 ± 3.737
5.736LeuArg: 5.736 ± 3.83
0.0LeuSer: 0.0 ± 0.0
9.56LeuThr: 9.56 ± 0.488
1.912LeuVal: 1.912 ± 1.671
0.0LeuTrp: 0.0 ± 0.0
7.648LeuTyr: 7.648 ± 2.159
0.0LeuXaa: 0.0 ± 0.0
Met
1.912MetAla: 1.912 ± 1.277
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
0.0MetGlu: 0.0 ± 0.0
0.0MetPhe: 0.0 ± 0.0
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
1.912MetIle: 1.912 ± 1.277
0.0MetLys: 0.0 ± 0.0
0.0MetLeu: 0.0 ± 0.0
1.912MetMet: 1.912 ± 1.671
1.912MetAsn: 1.912 ± 1.671
5.736MetPro: 5.736 ± 5.014
0.0MetGln: 0.0 ± 0.0
3.824MetArg: 3.824 ± 2.553
0.0MetSer: 0.0 ± 0.0
3.824MetThr: 3.824 ± 2.553
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.824AsnAla: 3.824 ± 0.395
1.912AsnCys: 1.912 ± 1.277
0.0AsnAsp: 0.0 ± 0.0
0.0AsnGlu: 0.0 ± 0.0
3.824AsnPhe: 3.824 ± 3.342
3.824AsnGly: 3.824 ± 0.395
1.912AsnHis: 1.912 ± 1.671
3.824AsnIle: 3.824 ± 3.342
7.648AsnLys: 7.648 ± 2.159
5.736AsnLeu: 5.736 ± 2.066
0.0AsnMet: 0.0 ± 0.0
5.736AsnAsn: 5.736 ± 0.882
0.0AsnPro: 0.0 ± 0.0
3.824AsnGln: 3.824 ± 3.342
3.824AsnArg: 3.824 ± 3.342
1.912AsnSer: 1.912 ± 1.671
0.0AsnThr: 0.0 ± 0.0
3.824AsnVal: 3.824 ± 0.395
0.0AsnTrp: 0.0 ± 0.0
3.824AsnTyr: 3.824 ± 2.553
0.0AsnXaa: 0.0 ± 0.0
Pro
0.0ProAla: 0.0 ± 0.0
1.912ProCys: 1.912 ± 1.277
0.0ProAsp: 0.0 ± 0.0
3.824ProGlu: 3.824 ± 2.553
3.824ProPhe: 3.824 ± 0.395
3.824ProGly: 3.824 ± 0.395
1.912ProHis: 1.912 ± 1.277
0.0ProIle: 0.0 ± 0.0
5.736ProLys: 5.736 ± 5.014
3.824ProLeu: 3.824 ± 0.395
0.0ProMet: 0.0 ± 0.0
1.912ProAsn: 1.912 ± 1.671
1.912ProPro: 1.912 ± 1.277
5.736ProGln: 5.736 ± 5.014
3.824ProArg: 3.824 ± 2.553
3.824ProSer: 3.824 ± 0.395
0.0ProThr: 0.0 ± 0.0
1.912ProVal: 1.912 ± 1.671
0.0ProTrp: 0.0 ± 0.0
1.912ProTyr: 1.912 ± 1.277
0.0ProXaa: 0.0 ± 0.0
Gln
1.912GlnAla: 1.912 ± 1.277
0.0GlnCys: 0.0 ± 0.0
1.912GlnAsp: 1.912 ± 1.671
3.824GlnGlu: 3.824 ± 0.395
1.912GlnPhe: 1.912 ± 1.671
5.736GlnGly: 5.736 ± 3.83
1.912GlnHis: 1.912 ± 1.671
1.912GlnIle: 1.912 ± 1.671
0.0GlnLys: 0.0 ± 0.0
1.912GlnLeu: 1.912 ± 1.671
1.912GlnMet: 1.912 ± 1.277
1.912GlnAsn: 1.912 ± 1.671
1.912GlnPro: 1.912 ± 1.671
1.912GlnGln: 1.912 ± 1.671
1.912GlnArg: 1.912 ± 1.671
3.824GlnSer: 3.824 ± 2.553
7.648GlnThr: 7.648 ± 6.685
3.824GlnVal: 3.824 ± 2.553
0.0GlnTrp: 0.0 ± 0.0
1.912GlnTyr: 1.912 ± 1.671
0.0GlnXaa: 0.0 ± 0.0
Arg
9.56ArgAla: 9.56 ± 6.383
0.0ArgCys: 0.0 ± 0.0
1.912ArgAsp: 1.912 ± 1.277
1.912ArgGlu: 1.912 ± 1.671
1.912ArgPhe: 1.912 ± 1.277
9.56ArgGly: 9.56 ± 0.488
5.736ArgHis: 5.736 ± 2.066
1.912ArgIle: 1.912 ± 1.671
5.736ArgLys: 5.736 ± 5.014
5.736ArgLeu: 5.736 ± 0.882
0.0ArgMet: 0.0 ± 0.0
1.912ArgAsn: 1.912 ± 1.671
0.0ArgPro: 0.0 ± 0.0
1.912ArgGln: 1.912 ± 1.277
19.12ArgArg: 19.12 ± 13.764
5.736ArgSer: 5.736 ± 2.066
0.0ArgThr: 0.0 ± 0.0
3.824ArgVal: 3.824 ± 0.395
3.824ArgTrp: 3.824 ± 3.342
13.384ArgTyr: 13.384 ± 0.093
0.0ArgXaa: 0.0 ± 0.0
Ser
3.824SerAla: 3.824 ± 0.395
0.0SerCys: 0.0 ± 0.0
1.912SerAsp: 1.912 ± 1.277
1.912SerGlu: 1.912 ± 1.671
0.0SerPhe: 0.0 ± 0.0
1.912SerGly: 1.912 ± 1.277
1.912SerHis: 1.912 ± 1.277
1.912SerIle: 1.912 ± 1.671
3.824SerLys: 3.824 ± 0.395
0.0SerLeu: 0.0 ± 0.0
3.824SerMet: 3.824 ± 3.342
5.736SerAsn: 5.736 ± 2.066
0.0SerPro: 0.0 ± 0.0
0.0SerGln: 0.0 ± 0.0
11.472SerArg: 11.472 ± 4.132
3.824SerSer: 3.824 ± 3.342
1.912SerThr: 1.912 ± 1.671
0.0SerVal: 0.0 ± 0.0
1.912SerTrp: 1.912 ± 1.671
3.824SerTyr: 3.824 ± 3.342
0.0SerXaa: 0.0 ± 0.0
Thr
5.736ThrAla: 5.736 ± 2.066
0.0ThrCys: 0.0 ± 0.0
3.824ThrAsp: 3.824 ± 2.553
5.736ThrGlu: 5.736 ± 0.882
1.912ThrPhe: 1.912 ± 1.277
3.824ThrGly: 3.824 ± 2.553
0.0ThrHis: 0.0 ± 0.0
3.824ThrIle: 3.824 ± 0.395
3.824ThrLys: 3.824 ± 2.553
5.736ThrLeu: 5.736 ± 2.066
1.912ThrMet: 1.912 ± 0.767
3.824ThrAsn: 3.824 ± 3.342
5.736ThrPro: 5.736 ± 2.066
0.0ThrGln: 0.0 ± 0.0
0.0ThrArg: 0.0 ± 0.0
3.824ThrSer: 3.824 ± 0.395
5.736ThrThr: 5.736 ± 2.066
3.824ThrVal: 3.824 ± 0.395
1.912ThrTrp: 1.912 ± 1.671
5.736ThrTyr: 5.736 ± 2.066
0.0ThrXaa: 0.0 ± 0.0
Val
5.736ValAla: 5.736 ± 0.882
0.0ValCys: 0.0 ± 0.0
3.824ValAsp: 3.824 ± 2.553
3.824ValGlu: 3.824 ± 2.553
0.0ValPhe: 0.0 ± 0.0
11.472ValGly: 11.472 ± 4.712
3.824ValHis: 3.824 ± 0.395
5.736ValIle: 5.736 ± 3.83
3.824ValLys: 3.824 ± 2.553
1.912ValLeu: 1.912 ± 1.277
1.912ValMet: 1.912 ± 1.277
3.824ValAsn: 3.824 ± 3.342
0.0ValPro: 0.0 ± 0.0
5.736ValGln: 5.736 ± 0.882
1.912ValArg: 1.912 ± 1.671
0.0ValSer: 0.0 ± 0.0
3.824ValThr: 3.824 ± 0.395
3.824ValVal: 3.824 ± 2.553
0.0ValTrp: 0.0 ± 0.0
1.912ValTyr: 1.912 ± 1.277
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
1.912TrpCys: 1.912 ± 1.671
1.912TrpAsp: 1.912 ± 1.277
0.0TrpGlu: 0.0 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
3.824TrpIle: 3.824 ± 0.395
3.824TrpLys: 3.824 ± 2.553
1.912TrpLeu: 1.912 ± 1.277
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
3.824TrpArg: 3.824 ± 3.342
0.0TrpSer: 0.0 ± 0.0
1.912TrpThr: 1.912 ± 1.671
0.0TrpVal: 0.0 ± 0.0
1.912TrpTrp: 1.912 ± 1.277
1.912TrpTyr: 1.912 ± 1.277
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.824TyrAla: 3.824 ± 0.395
3.824TyrCys: 3.824 ± 2.553
5.736TyrAsp: 5.736 ± 0.882
1.912TyrGlu: 1.912 ± 1.277
3.824TyrPhe: 3.824 ± 3.342
7.648TyrGly: 7.648 ± 0.789
0.0TyrHis: 0.0 ± 0.0
1.912TyrIle: 1.912 ± 1.671
0.0TyrLys: 0.0 ± 0.0
1.912TyrLeu: 1.912 ± 1.277
1.912TyrMet: 1.912 ± 0.888
1.912TyrAsn: 1.912 ± 1.277
1.912TyrPro: 1.912 ± 1.277
1.912TyrGln: 1.912 ± 1.277
5.736TyrArg: 5.736 ± 2.066
3.824TyrSer: 3.824 ± 3.342
1.912TyrThr: 1.912 ± 1.277
3.824TyrVal: 3.824 ± 0.395
1.912TyrTrp: 1.912 ± 1.277
1.912TyrTyr: 1.912 ± 1.671
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (524 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski