Ustilago trichophora

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13002 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C3DYT7|A0A5C3DYT7_9BASI Related to LST8 - required for transport of permeases from the golgi to the plasma membrane OS=Ustilago trichophora OX=86804 GN=UTRI_03848_B PE=3 SV=1
MM1 pKa = 6.93YY2 pKa = 9.56QACVNFDD9 pKa = 4.43SINCDD14 pKa = 3.06QHH16 pKa = 8.18DD17 pKa = 4.15VASAASVPILPSSNWLVDD35 pKa = 3.52AANEE39 pKa = 4.01LHH41 pKa = 6.87SEE43 pKa = 4.27YY44 pKa = 10.34PPEE47 pKa = 4.6TPHH50 pKa = 5.42QTNNAPMEE58 pKa = 4.56PCEE61 pKa = 4.38HH62 pKa = 7.19LDD64 pKa = 3.75LFDD67 pKa = 4.53SASVDD72 pKa = 5.11DD73 pKa = 5.92NDD75 pKa = 6.3DD76 pKa = 5.0DD77 pKa = 7.12DD78 pKa = 7.36DD79 pKa = 7.34DD80 pKa = 6.93DD81 pKa = 6.67DD82 pKa = 4.75EE83 pKa = 6.9SEE85 pKa = 6.36LLACWDD91 pKa = 3.84SQDD94 pKa = 4.59EE95 pKa = 4.41YY96 pKa = 11.34NDD98 pKa = 3.43NDD100 pKa = 4.07GATTPVQFGVEE111 pKa = 4.21HH112 pKa = 6.42QDD114 pKa = 2.96EE115 pKa = 4.63SQTFEE120 pKa = 3.79EE121 pKa = 4.42QQRR124 pKa = 11.84IQQPMPASSQSAEE137 pKa = 3.8IVSSNTDD144 pKa = 2.88EE145 pKa = 4.7TIPRR149 pKa = 11.84TRR151 pKa = 11.84RR152 pKa = 11.84RR153 pKa = 11.84CMAEE157 pKa = 3.41IARR160 pKa = 11.84TLAIHH165 pKa = 6.42MGMASIAFGLGCLSTTVRR183 pKa = 11.84TAAPNPSQTFSVDD196 pKa = 3.14KK197 pKa = 10.84LLQLALNHH205 pKa = 6.57LAA207 pKa = 4.66

Molecular weight: 22.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C3EBZ5|A0A5C3EBZ5_9BASI alpha-1 2-Mannosidase OS=Ustilago trichophora OX=86804 GN=UTRI_04591_B PE=3 SV=1
MM1 pKa = 7.1RR2 pKa = 11.84AKK4 pKa = 9.12WRR6 pKa = 11.84KK7 pKa = 8.88KK8 pKa = 8.94RR9 pKa = 11.84MRR11 pKa = 11.84RR12 pKa = 11.84LRR14 pKa = 11.84RR15 pKa = 11.84KK16 pKa = 8.14RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 8.51MRR21 pKa = 11.84ARR23 pKa = 11.84SKK25 pKa = 11.11

Molecular weight: 3.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13002

0

13002

7812304

25

4858

600.9

65.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.266 ± 0.027

0.963 ± 0.007

5.692 ± 0.014

5.71 ± 0.019

3.251 ± 0.012

6.816 ± 0.024

2.494 ± 0.011

4.135 ± 0.014

4.634 ± 0.019

8.744 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.929 ± 0.007

3.427 ± 0.012

6.23 ± 0.019

4.345 ± 0.019

6.259 ± 0.017

10.042 ± 0.034

6.013 ± 0.013

5.641 ± 0.016

1.176 ± 0.007

2.233 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski