Papaya cytorhabdovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Cytorhabdovirus

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A386GWS9|A0A386GWS9_9RHAB Large structural protein OS=Papaya cytorhabdovirus OX=2364291 GN=L PE=4 SV=1
MM1 pKa = 7.77PKK3 pKa = 9.59TYY5 pKa = 10.44KK6 pKa = 10.82DD7 pKa = 3.13NSAYY11 pKa = 10.27AKK13 pKa = 10.34EE14 pKa = 4.16IFTPITKK21 pKa = 9.95EE22 pKa = 3.52ISHH25 pKa = 6.35GRR27 pKa = 11.84IQKK30 pKa = 7.46QTWTDD35 pKa = 3.36QVFEE39 pKa = 4.15EE40 pKa = 4.18MQVYY44 pKa = 10.2KK45 pKa = 10.49INKK48 pKa = 6.49YY49 pKa = 7.1TAGDD53 pKa = 3.64LEE55 pKa = 4.72RR56 pKa = 11.84YY57 pKa = 8.46GMYY60 pKa = 9.77MVDD63 pKa = 4.25SISKK67 pKa = 10.2KK68 pKa = 8.57EE69 pKa = 3.9VSMDD73 pKa = 2.84TCYY76 pKa = 10.96AILILACHH84 pKa = 6.24LHH86 pKa = 6.7KK87 pKa = 10.44IAPSKK92 pKa = 11.08DD93 pKa = 3.1FTLFEE98 pKa = 4.84LPLKK102 pKa = 9.79GTLPLPKK109 pKa = 9.34MEE111 pKa = 6.05VFAAWNKK118 pKa = 8.69EE119 pKa = 3.64QAEE122 pKa = 4.32EE123 pKa = 4.45GGEE126 pKa = 3.94EE127 pKa = 4.01DD128 pKa = 3.83GKK130 pKa = 11.31GSEE133 pKa = 4.22EE134 pKa = 4.44SEE136 pKa = 4.02DD137 pKa = 3.78DD138 pKa = 3.98SEE140 pKa = 5.01HH141 pKa = 6.71EE142 pKa = 4.78EE143 pKa = 4.34ISVDD147 pKa = 3.35PSKK150 pKa = 11.15GGKK153 pKa = 9.15EE154 pKa = 3.88KK155 pKa = 10.57TEE157 pKa = 4.51DD158 pKa = 3.8PQSATAIDD166 pKa = 3.76KK167 pKa = 10.31EE168 pKa = 4.19RR169 pKa = 11.84AANCVRR175 pKa = 11.84FFCFCAAFYY184 pKa = 11.06LRR186 pKa = 11.84LCIKK190 pKa = 10.21DD191 pKa = 3.43IQDD194 pKa = 3.23LSTPYY199 pKa = 10.16TRR201 pKa = 11.84MKK203 pKa = 10.18EE204 pKa = 3.85RR205 pKa = 11.84YY206 pKa = 6.74TRR208 pKa = 11.84FYY210 pKa = 10.68QGVIPTSGEE219 pKa = 4.21DD220 pKa = 3.38IPPSEE225 pKa = 4.48SVKK228 pKa = 10.54SLKK231 pKa = 9.89TFFAGDD237 pKa = 4.26RR238 pKa = 11.84IISRR242 pKa = 11.84TWVKK246 pKa = 10.66LFVPWHH252 pKa = 6.91DD253 pKa = 3.57KK254 pKa = 11.71AEE256 pKa = 4.25VGSPQDD262 pKa = 3.09GMVIYY267 pKa = 10.41LAVLPFAFSGMHH279 pKa = 6.44ALKK282 pKa = 11.03LMDD285 pKa = 5.13DD286 pKa = 4.56VIEE289 pKa = 4.17MTHH292 pKa = 6.94LKK294 pKa = 9.39DD295 pKa = 3.08TDD297 pKa = 4.94LIYY300 pKa = 11.16QMMHH304 pKa = 6.54PRR306 pKa = 11.84HH307 pKa = 5.89NSALASISEE316 pKa = 4.77IYY318 pKa = 9.88AKK320 pKa = 10.17HH321 pKa = 5.49YY322 pKa = 10.2PEE324 pKa = 5.43EE325 pKa = 4.86GSQKK329 pKa = 8.74NTYY332 pKa = 8.66VKK334 pKa = 9.43YY335 pKa = 10.57ARR337 pKa = 11.84VVGPQFFPALQTKK350 pKa = 8.68KK351 pKa = 10.68CKK353 pKa = 10.58GLVCVLANLVVLHH366 pKa = 5.96QKK368 pKa = 6.68TTEE371 pKa = 3.93EE372 pKa = 4.09TGDD375 pKa = 3.54PRR377 pKa = 11.84SIAGIDD383 pKa = 4.15DD384 pKa = 3.74ISDD387 pKa = 3.33EE388 pKa = 4.09LMKK391 pKa = 10.63FGKK394 pKa = 10.31RR395 pKa = 11.84MAKK398 pKa = 9.95IMMKK402 pKa = 10.06NAPKK406 pKa = 8.91TASYY410 pKa = 9.27MYY412 pKa = 10.8SSTAKK417 pKa = 9.83EE418 pKa = 3.98AEE420 pKa = 4.22EE421 pKa = 5.29GGDD424 pKa = 3.65STDD427 pKa = 3.66EE428 pKa = 3.88EE429 pKa = 4.78SEE431 pKa = 4.04EE432 pKa = 4.26DD433 pKa = 4.22EE434 pKa = 4.68EE435 pKa = 7.05DD436 pKa = 4.13IDD438 pKa = 5.02PEE440 pKa = 4.14LLKK443 pKa = 10.83VGKK446 pKa = 10.08RR447 pKa = 11.84IYY449 pKa = 10.62KK450 pKa = 9.47PP451 pKa = 3.2

Molecular weight: 51.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A386GV82|A0A386GV82_9RHAB Nucleocapsid protein OS=Papaya cytorhabdovirus OX=2364291 GN=N PE=4 SV=1
MM1 pKa = 7.54EE2 pKa = 5.76KK3 pKa = 10.58SNSAKK8 pKa = 10.58GPISSLVSAHH18 pKa = 5.46VSSSKK23 pKa = 10.21RR24 pKa = 11.84IKK26 pKa = 10.95VKK28 pKa = 10.14VQQHH32 pKa = 4.1QEE34 pKa = 4.0EE35 pKa = 4.7YY36 pKa = 10.6SIRR39 pKa = 11.84LPFSTKK45 pKa = 10.47KK46 pKa = 9.55LTSEE50 pKa = 4.32YY51 pKa = 10.47ATVTLLEE58 pKa = 4.29IFYY61 pKa = 10.55KK62 pKa = 10.88GYY64 pKa = 10.31IFNAQGSTIEE74 pKa = 3.87VVIRR78 pKa = 11.84DD79 pKa = 3.96KK80 pKa = 11.31RR81 pKa = 11.84SVSQTEE87 pKa = 3.95QKK89 pKa = 10.17RR90 pKa = 11.84LAVIIPASKK99 pKa = 10.1SCYY102 pKa = 8.49LTVKK106 pKa = 9.82GFSSAPIEE114 pKa = 4.19EE115 pKa = 4.61GCPYY119 pKa = 9.92EE120 pKa = 4.89VSIKK124 pKa = 9.82TVVRR128 pKa = 11.84NIRR131 pKa = 11.84FGITLGRR138 pKa = 11.84LDD140 pKa = 3.7IRR142 pKa = 11.84PHH144 pKa = 6.27LFYY147 pKa = 11.11SNHH150 pKa = 5.94FEE152 pKa = 4.68DD153 pKa = 5.47GDD155 pKa = 4.0YY156 pKa = 10.72LTVNKK161 pKa = 10.04VEE163 pKa = 4.2GPEE166 pKa = 4.08LSLKK170 pKa = 10.58RR171 pKa = 11.84GSLTNKK177 pKa = 7.13EE178 pKa = 3.94APYY181 pKa = 9.34TVSLIPTEE189 pKa = 4.02

Molecular weight: 21.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

3985

26

2113

498.1

56.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.868 ± 0.557

1.807 ± 0.379

5.445 ± 0.527

7.202 ± 1.142

4.768 ± 0.7

5.32 ± 0.186

1.907 ± 0.18

6.349 ± 0.22

7.955 ± 1.183

9.26 ± 0.879

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.061 ± 0.297

3.614 ± 0.4

4.567 ± 0.258

2.886 ± 0.321

4.592 ± 0.463

9.184 ± 0.55

5.621 ± 0.244

6.851 ± 0.394

1.305 ± 0.29

3.438 ± 0.282
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski