Kocuria sp. HSID16901

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Kocuria; unclassified Kocuria

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2178 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A433H2H6|A0A433H2H6_9MICC ATP-sulfurylase large subunit OS=Kocuria sp. HSID16901 OX=2419505 GN=D8M21_03535 PE=4 SV=1
MM1 pKa = 7.44ARR3 pKa = 11.84ALLIVDD9 pKa = 4.02VQNDD13 pKa = 3.76FCRR16 pKa = 11.84GGALATDD23 pKa = 3.98RR24 pKa = 11.84GDD26 pKa = 3.98DD27 pKa = 3.49VAAEE31 pKa = 4.15ISAYY35 pKa = 10.95LLTHH39 pKa = 6.3HH40 pKa = 7.26AAYY43 pKa = 10.31DD44 pKa = 3.94VVVTTQDD51 pKa = 2.65WHH53 pKa = 6.83IDD55 pKa = 3.48PGTHH59 pKa = 6.48FSEE62 pKa = 5.18NPDD65 pKa = 3.64FTNSWPVHH73 pKa = 5.38CVANSSGAAFHH84 pKa = 7.55PDD86 pKa = 3.07LDD88 pKa = 3.8MDD90 pKa = 4.11YY91 pKa = 10.98VDD93 pKa = 4.53AMFRR97 pKa = 11.84KK98 pKa = 10.15GEE100 pKa = 3.99YY101 pKa = 8.44EE102 pKa = 3.52AAYY105 pKa = 10.68SGFEE109 pKa = 3.94GLLAPEE115 pKa = 4.69DD116 pKa = 3.66SVMTGEE122 pKa = 4.74HH123 pKa = 6.52EE124 pKa = 4.47PGHH127 pKa = 5.75MPEE130 pKa = 4.54DD131 pKa = 3.89TLKK134 pKa = 11.09VSLDD138 pKa = 3.44DD139 pKa = 3.75WLQEE143 pKa = 3.96QDD145 pKa = 3.58VTDD148 pKa = 3.63VDD150 pKa = 4.33VVGIATDD157 pKa = 3.55YY158 pKa = 10.74CVRR161 pKa = 11.84ATALDD166 pKa = 3.89AADD169 pKa = 3.97AGYY172 pKa = 7.43EE173 pKa = 4.08TRR175 pKa = 11.84VLVDD179 pKa = 3.65LTSAVADD186 pKa = 4.13EE187 pKa = 4.32TAEE190 pKa = 4.04TAVAEE195 pKa = 4.3LEE197 pKa = 4.27DD198 pKa = 4.63AGVQVIEE205 pKa = 4.38STSVGRR211 pKa = 4.29

Molecular weight: 22.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A433GWA0|A0A433GWA0_9MICC Ribonuclease P protein component OS=Kocuria sp. HSID16901 OX=2419505 GN=rnpA PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 9.97KK16 pKa = 9.33HH17 pKa = 4.25GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILANRR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.48GRR40 pKa = 11.84ASVSAA45 pKa = 3.98

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2178

0

2178

733174

29

2179

336.6

36.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.986 ± 0.057

0.651 ± 0.013

6.03 ± 0.046

6.43 ± 0.065

3.172 ± 0.035

8.651 ± 0.055

2.336 ± 0.022

4.767 ± 0.033

3.047 ± 0.04

9.378 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.232 ± 0.023

2.663 ± 0.029

5.098 ± 0.034

3.34 ± 0.029

6.773 ± 0.061

6.693 ± 0.04

5.953 ± 0.035

8.204 ± 0.037

1.406 ± 0.023

2.19 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski