Amino acid dipepetide frequency for Longjawed orbweaver circular virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
1.658AlaAla: 1.658 ± 1.128
0.0AlaCys: 0.0 ± 0.0
1.658AlaAsp: 1.658 ± 1.128
3.317AlaGlu: 3.317 ± 2.257
3.317AlaPhe: 3.317 ± 0.231
3.317AlaGly: 3.317 ± 2.257
0.0AlaHis: 0.0 ± 0.0
4.975AlaIle: 4.975 ± 4.078
6.633AlaLys: 6.633 ± 0.462
1.658AlaLeu: 1.658 ± 1.128
3.317AlaMet: 3.317 ± 0.231
0.0AlaAsn: 0.0 ± 0.0
1.658AlaPro: 1.658 ± 1.128
0.0AlaGln: 0.0 ± 0.0
4.975AlaArg: 4.975 ± 1.59
3.317AlaSer: 3.317 ± 0.231
0.0AlaThr: 0.0 ± 0.0
6.633AlaVal: 6.633 ± 2.95
0.0AlaTrp: 0.0 ± 0.0
1.658AlaTyr: 1.658 ± 1.359
0.0AlaXaa: 0.0 ± 0.0
Cys
1.658CysAla: 1.658 ± 1.128
0.0CysCys: 0.0 ± 0.0
1.658CysAsp: 1.658 ± 1.359
0.0CysGlu: 0.0 ± 0.0
3.317CysPhe: 3.317 ± 0.231
4.975CysGly: 4.975 ± 0.897
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
3.317CysLys: 3.317 ± 2.257
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.658CysAsn: 1.658 ± 1.128
1.658CysPro: 1.658 ± 1.128
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
1.658CysSer: 1.658 ± 1.359
3.317CysThr: 3.317 ± 2.719
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.658CysTyr: 1.658 ± 1.128
0.0CysXaa: 0.0 ± 0.0
Asp
4.975AspAla: 4.975 ± 1.59
0.0AspCys: 0.0 ± 0.0
3.317AspAsp: 3.317 ± 0.231
0.0AspGlu: 0.0 ± 0.0
4.975AspPhe: 4.975 ± 0.897
1.658AspGly: 1.658 ± 1.128
0.0AspHis: 0.0 ± 0.0
3.317AspIle: 3.317 ± 2.257
1.658AspLys: 1.658 ± 1.359
4.975AspLeu: 4.975 ± 1.59
0.0AspMet: 0.0 ± 0.0
1.658AspAsn: 1.658 ± 1.128
1.658AspPro: 1.658 ± 1.359
0.0AspGln: 0.0 ± 0.0
3.317AspArg: 3.317 ± 0.231
6.633AspSer: 6.633 ± 2.026
0.0AspThr: 0.0 ± 0.0
9.95AspVal: 9.95 ± 1.795
0.0AspTrp: 0.0 ± 0.0
4.975AspTyr: 4.975 ± 0.897
0.0AspXaa: 0.0 ± 0.0
Glu
1.658GluAla: 1.658 ± 1.128
0.0GluCys: 0.0 ± 0.0
6.633GluAsp: 6.633 ± 2.026
4.975GluGlu: 4.975 ± 3.385
3.317GluPhe: 3.317 ± 0.231
0.0GluGly: 0.0 ± 0.0
3.317GluHis: 3.317 ± 2.257
3.317GluIle: 3.317 ± 0.231
1.658GluLys: 1.658 ± 1.359
1.658GluLeu: 1.658 ± 1.128
3.317GluMet: 3.317 ± 0.968
4.975GluAsn: 4.975 ± 3.385
0.0GluPro: 0.0 ± 0.0
1.658GluGln: 1.658 ± 1.128
4.975GluArg: 4.975 ± 1.59
1.658GluSer: 1.658 ± 1.128
1.658GluThr: 1.658 ± 1.359
6.633GluVal: 6.633 ± 2.026
0.0GluTrp: 0.0 ± 0.0
3.317GluTyr: 3.317 ± 0.231
0.0GluXaa: 0.0 ± 0.0
Phe
4.975PheAla: 4.975 ± 1.59
0.0PheCys: 0.0 ± 0.0
4.975PheAsp: 4.975 ± 0.897
6.633PheGlu: 6.633 ± 2.026
3.317PhePhe: 3.317 ± 2.719
4.975PheGly: 4.975 ± 0.897
1.658PheHis: 1.658 ± 1.359
4.975PheIle: 4.975 ± 0.897
8.292PheLys: 8.292 ± 0.666
6.633PheLeu: 6.633 ± 2.026
0.0PheMet: 0.0 ± 0.0
4.975PheAsn: 4.975 ± 4.078
0.0PhePro: 0.0 ± 0.0
0.0PheGln: 0.0 ± 0.0
1.658PheArg: 1.658 ± 1.359
3.317PheSer: 3.317 ± 0.231
1.658PheThr: 1.658 ± 1.359
8.292PheVal: 8.292 ± 1.821
0.0PheTrp: 0.0 ± 0.0
1.658PheTyr: 1.658 ± 1.359
0.0PheXaa: 0.0 ± 0.0
Gly
3.317GlyAla: 3.317 ± 2.719
1.658GlyCys: 1.658 ± 1.359
3.317GlyAsp: 3.317 ± 2.257
1.658GlyGlu: 1.658 ± 1.128
3.317GlyPhe: 3.317 ± 0.231
4.975GlyGly: 4.975 ± 0.897
4.975GlyHis: 4.975 ± 0.897
1.658GlyIle: 1.658 ± 1.359
1.658GlyLys: 1.658 ± 1.128
3.317GlyLeu: 3.317 ± 2.719
0.0GlyMet: 0.0 ± 0.0
3.317GlyAsn: 3.317 ± 0.231
3.317GlyPro: 3.317 ± 2.257
1.658GlyGln: 1.658 ± 1.128
3.317GlyArg: 3.317 ± 2.257
6.633GlySer: 6.633 ± 2.026
6.633GlyThr: 6.633 ± 2.95
3.317GlyVal: 3.317 ± 2.257
1.658GlyTrp: 1.658 ± 1.128
4.975GlyTyr: 4.975 ± 3.385
0.0GlyXaa: 0.0 ± 0.0
His
1.658HisAla: 1.658 ± 1.359
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
1.658HisGlu: 1.658 ± 1.128
1.658HisPhe: 1.658 ± 1.128
3.317HisGly: 3.317 ± 0.231
0.0HisHis: 0.0 ± 0.0
1.658HisIle: 1.658 ± 1.128
1.658HisLys: 1.658 ± 1.359
0.0HisLeu: 0.0 ± 0.0
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
1.658HisPro: 1.658 ± 1.128
0.0HisGln: 0.0 ± 0.0
0.0HisArg: 0.0 ± 0.0
0.0HisSer: 0.0 ± 0.0
0.0HisThr: 0.0 ± 0.0
4.975HisVal: 4.975 ± 0.897
0.0HisTrp: 0.0 ± 0.0
1.658HisTyr: 1.658 ± 1.128
0.0HisXaa: 0.0 ± 0.0
Ile
0.0IleAla: 0.0 ± 0.0
1.658IleCys: 1.658 ± 1.128
0.0IleAsp: 0.0 ± 0.0
4.975IleGlu: 4.975 ± 3.385
3.317IlePhe: 3.317 ± 0.231
8.292IleGly: 8.292 ± 4.309
3.317IleHis: 3.317 ± 0.231
0.0IleIle: 0.0 ± 0.0
4.975IleLys: 4.975 ± 3.385
1.658IleLeu: 1.658 ± 1.359
1.658IleMet: 1.658 ± 1.359
3.317IleAsn: 3.317 ± 0.231
1.658IlePro: 1.658 ± 1.128
0.0IleGln: 0.0 ± 0.0
3.317IleArg: 3.317 ± 0.231
3.317IleSer: 3.317 ± 0.231
3.317IleThr: 3.317 ± 2.719
0.0IleVal: 0.0 ± 0.0
1.658IleTrp: 1.658 ± 1.128
3.317IleTyr: 3.317 ± 2.257
0.0IleXaa: 0.0 ± 0.0
Lys
6.633LysAla: 6.633 ± 2.026
1.658LysCys: 1.658 ± 1.128
4.975LysAsp: 4.975 ± 0.897
1.658LysGlu: 1.658 ± 1.359
1.658LysPhe: 1.658 ± 1.359
4.975LysGly: 4.975 ± 0.897
0.0LysHis: 0.0 ± 0.0
3.317LysIle: 3.317 ± 2.257
9.95LysLys: 9.95 ± 4.282
8.292LysLeu: 8.292 ± 1.821
0.0LysMet: 0.0 ± 0.0
3.317LysAsn: 3.317 ± 2.719
4.975LysPro: 4.975 ± 1.59
3.317LysGln: 3.317 ± 0.231
1.658LysArg: 1.658 ± 1.128
3.317LysSer: 3.317 ± 2.719
3.317LysThr: 3.317 ± 2.719
8.292LysVal: 8.292 ± 0.666
3.317LysTrp: 3.317 ± 0.231
3.317LysTyr: 3.317 ± 0.231
0.0LysXaa: 0.0 ± 0.0
Leu
1.658LeuAla: 1.658 ± 1.128
3.317LeuCys: 3.317 ± 2.719
0.0LeuAsp: 0.0 ± 0.0
3.317LeuGlu: 3.317 ± 0.231
4.975LeuPhe: 4.975 ± 0.897
3.317LeuGly: 3.317 ± 0.231
0.0LeuHis: 0.0 ± 0.0
3.317LeuIle: 3.317 ± 2.257
4.975LeuLys: 4.975 ± 0.897
8.292LeuLeu: 8.292 ± 0.666
0.0LeuMet: 0.0 ± 0.0
6.633LeuAsn: 6.633 ± 0.462
4.975LeuPro: 4.975 ± 1.59
0.0LeuGln: 0.0 ± 0.0
8.292LeuArg: 8.292 ± 4.309
4.975LeuSer: 4.975 ± 3.385
3.317LeuThr: 3.317 ± 0.231
0.0LeuVal: 0.0 ± 0.0
0.0LeuTrp: 0.0 ± 0.0
1.658LeuTyr: 1.658 ± 1.128
0.0LeuXaa: 0.0 ± 0.0
Met
0.0MetAla: 0.0 ± 0.0
0.0MetCys: 0.0 ± 0.0
1.658MetAsp: 1.658 ± 1.128
0.0MetGlu: 0.0 ± 0.0
3.317MetPhe: 3.317 ± 2.719
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
0.0MetLys: 0.0 ± 0.0
1.658MetLeu: 1.658 ± 1.359
0.0MetMet: 0.0 ± 0.0
3.317MetAsn: 3.317 ± 0.231
0.0MetPro: 0.0 ± 0.0
0.0MetGln: 0.0 ± 0.0
3.317MetArg: 3.317 ± 0.231
1.658MetSer: 1.658 ± 1.128
0.0MetThr: 0.0 ± 0.0
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
3.317MetTyr: 3.317 ± 2.719
0.0MetXaa: 0.0 ± 0.0
Asn
0.0AsnAla: 0.0 ± 0.0
3.317AsnCys: 3.317 ± 2.719
1.658AsnAsp: 1.658 ± 1.359
8.292AsnGlu: 8.292 ± 0.666
4.975AsnPhe: 4.975 ± 1.59
1.658AsnGly: 1.658 ± 1.128
1.658AsnHis: 1.658 ± 1.128
4.975AsnIle: 4.975 ± 0.897
1.658AsnLys: 1.658 ± 1.128
3.317AsnLeu: 3.317 ± 0.231
1.658AsnMet: 1.658 ± 1.359
3.317AsnAsn: 3.317 ± 2.719
1.658AsnPro: 1.658 ± 1.128
0.0AsnGln: 0.0 ± 0.0
0.0AsnArg: 0.0 ± 0.0
4.975AsnSer: 4.975 ± 1.59
0.0AsnThr: 0.0 ± 0.0
6.633AsnVal: 6.633 ± 0.462
1.658AsnTrp: 1.658 ± 1.128
1.658AsnTyr: 1.658 ± 1.359
0.0AsnXaa: 0.0 ± 0.0
Pro
3.317ProAla: 3.317 ± 2.719
0.0ProCys: 0.0 ± 0.0
3.317ProAsp: 3.317 ± 2.719
1.658ProGlu: 1.658 ± 1.359
0.0ProPhe: 0.0 ± 0.0
1.658ProGly: 1.658 ± 1.128
0.0ProHis: 0.0 ± 0.0
3.317ProIle: 3.317 ± 2.719
3.317ProLys: 3.317 ± 2.257
3.317ProLeu: 3.317 ± 2.257
0.0ProMet: 0.0 ± 0.0
3.317ProAsn: 3.317 ± 2.719
3.317ProPro: 3.317 ± 2.257
3.317ProGln: 3.317 ± 0.231
1.658ProArg: 1.658 ± 1.128
6.633ProSer: 6.633 ± 2.026
0.0ProThr: 0.0 ± 0.0
3.317ProVal: 3.317 ± 2.257
0.0ProTrp: 0.0 ± 0.0
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
3.317GlnAla: 3.317 ± 2.257
0.0GlnCys: 0.0 ± 0.0
0.0GlnAsp: 0.0 ± 0.0
0.0GlnGlu: 0.0 ± 0.0
0.0GlnPhe: 0.0 ± 0.0
1.658GlnGly: 1.658 ± 1.128
0.0GlnHis: 0.0 ± 0.0
0.0GlnIle: 0.0 ± 0.0
3.317GlnLys: 3.317 ± 0.231
3.317GlnLeu: 3.317 ± 2.257
0.0GlnMet: 0.0 ± 0.879
0.0GlnAsn: 0.0 ± 0.0
0.0GlnPro: 0.0 ± 0.0
1.658GlnGln: 1.658 ± 1.128
1.658GlnArg: 1.658 ± 1.128
0.0GlnSer: 0.0 ± 0.0
1.658GlnThr: 1.658 ± 1.128
1.658GlnVal: 1.658 ± 1.128
0.0GlnTrp: 0.0 ± 0.0
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.317ArgAla: 3.317 ± 0.231
3.317ArgCys: 3.317 ± 2.257
0.0ArgAsp: 0.0 ± 0.0
3.317ArgGlu: 3.317 ± 0.231
4.975ArgPhe: 4.975 ± 1.59
3.317ArgGly: 3.317 ± 2.257
0.0ArgHis: 0.0 ± 0.0
6.633ArgIle: 6.633 ± 2.95
9.95ArgLys: 9.95 ± 3.181
3.317ArgLeu: 3.317 ± 0.231
0.0ArgMet: 0.0 ± 0.0
0.0ArgAsn: 0.0 ± 0.0
3.317ArgPro: 3.317 ± 0.231
1.658ArgGln: 1.658 ± 1.128
16.584ArgArg: 16.584 ± 11.106
4.975ArgSer: 4.975 ± 1.59
0.0ArgThr: 0.0 ± 0.0
3.317ArgVal: 3.317 ± 0.231
0.0ArgTrp: 0.0 ± 0.0
6.633ArgTyr: 6.633 ± 0.462
0.0ArgXaa: 0.0 ± 0.0
Ser
3.317SerAla: 3.317 ± 2.719
3.317SerCys: 3.317 ± 2.257
9.95SerAsp: 9.95 ± 1.795
6.633SerGlu: 6.633 ± 2.026
4.975SerPhe: 4.975 ± 4.078
9.95SerGly: 9.95 ± 0.693
1.658SerHis: 1.658 ± 1.128
3.317SerIle: 3.317 ± 2.257
1.658SerLys: 1.658 ± 1.359
1.658SerLeu: 1.658 ± 1.128
1.658SerMet: 1.658 ± 1.359
3.317SerAsn: 3.317 ± 0.231
1.658SerPro: 1.658 ± 1.128
0.0SerGln: 0.0 ± 0.0
3.317SerArg: 3.317 ± 0.231
6.633SerSer: 6.633 ± 0.462
4.975SerThr: 4.975 ± 0.897
3.317SerVal: 3.317 ± 2.257
3.317SerTrp: 3.317 ± 2.719
1.658SerTyr: 1.658 ± 1.128
0.0SerXaa: 0.0 ± 0.0
Thr
1.658ThrAla: 1.658 ± 1.359
1.658ThrCys: 1.658 ± 1.359
1.658ThrAsp: 1.658 ± 1.359
3.317ThrGlu: 3.317 ± 0.231
3.317ThrPhe: 3.317 ± 2.719
4.975ThrGly: 4.975 ± 0.897
0.0ThrHis: 0.0 ± 0.0
0.0ThrIle: 0.0 ± 0.0
1.658ThrLys: 1.658 ± 1.359
1.658ThrLeu: 1.658 ± 1.128
1.658ThrMet: 1.658 ± 1.359
0.0ThrAsn: 0.0 ± 0.0
0.0ThrPro: 0.0 ± 0.0
1.658ThrGln: 1.658 ± 1.128
6.633ThrArg: 6.633 ± 2.026
6.633ThrSer: 6.633 ± 0.462
0.0ThrThr: 0.0 ± 0.0
6.633ThrVal: 6.633 ± 5.437
0.0ThrTrp: 0.0 ± 0.0
0.0ThrTyr: 0.0 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
3.317ValAla: 3.317 ± 2.257
1.658ValCys: 1.658 ± 1.128
3.317ValAsp: 3.317 ± 2.257
3.317ValGlu: 3.317 ± 0.231
8.292ValPhe: 8.292 ± 5.642
1.658ValGly: 1.658 ± 1.128
0.0ValHis: 0.0 ± 0.0
1.658ValIle: 1.658 ± 1.359
8.292ValLys: 8.292 ± 4.309
6.633ValLeu: 6.633 ± 2.95
0.0ValMet: 0.0 ± 0.0
4.975ValAsn: 4.975 ± 1.59
8.292ValPro: 8.292 ± 4.309
3.317ValGln: 3.317 ± 2.257
3.317ValArg: 3.317 ± 0.231
8.292ValSer: 8.292 ± 1.821
6.633ValThr: 6.633 ± 0.462
9.95ValVal: 9.95 ± 4.282
3.317ValTrp: 3.317 ± 0.231
3.317ValTyr: 3.317 ± 0.231
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
1.658TrpCys: 1.658 ± 1.128
3.317TrpAsp: 3.317 ± 0.231
0.0TrpGlu: 0.0 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
1.658TrpHis: 1.658 ± 1.359
1.658TrpIle: 1.658 ± 1.128
1.658TrpLys: 1.658 ± 1.359
1.658TrpLeu: 1.658 ± 1.128
1.658TrpMet: 1.658 ± 1.128
0.0TrpAsn: 0.0 ± 0.0
1.658TrpPro: 1.658 ± 1.359
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
0.0TrpSer: 0.0 ± 0.0
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
1.658TrpTrp: 1.658 ± 1.128
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.658TyrAla: 1.658 ± 1.128
1.658TyrCys: 1.658 ± 1.128
1.658TyrAsp: 1.658 ± 1.359
0.0TyrGlu: 0.0 ± 0.0
4.975TyrPhe: 4.975 ± 0.897
0.0TyrGly: 0.0 ± 0.0
1.658TyrHis: 1.658 ± 1.128
1.658TyrIle: 1.658 ± 1.128
1.658TyrLys: 1.658 ± 1.359
0.0TyrLeu: 0.0 ± 0.0
1.658TyrMet: 1.658 ± 1.128
4.975TyrAsn: 4.975 ± 3.385
0.0TyrPro: 0.0 ± 0.0
1.658TyrGln: 1.658 ± 1.128
6.633TyrArg: 6.633 ± 2.95
1.658TyrSer: 1.658 ± 1.128
6.633TyrThr: 6.633 ± 2.026
6.633TyrVal: 6.633 ± 5.437
0.0TyrTrp: 0.0 ± 0.0
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (604 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski