Gordonia phage Kenna

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Langleyhallvirinae; Getalongvirus; Gordonia virus Kenna

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 98 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S9UPU1|A0A3S9UPU1_9CAUD Minor tail protein OS=Gordonia phage Kenna OX=2499025 GN=34 PE=4 SV=1
MM1 pKa = 7.77SEE3 pKa = 3.82WLDD6 pKa = 4.28DD7 pKa = 3.44NGTRR11 pKa = 11.84HH12 pKa = 5.16WTDD15 pKa = 2.95DD16 pKa = 3.7DD17 pKa = 3.83GRR19 pKa = 11.84EE20 pKa = 4.18HH21 pKa = 7.18VDD23 pKa = 3.31LDD25 pKa = 3.51ASQEE29 pKa = 3.89LRR31 pKa = 11.84IDD33 pKa = 3.65FQMSQTRR40 pKa = 11.84STKK43 pKa = 9.31EE44 pKa = 3.43AAPEE48 pKa = 3.95FGDD51 pKa = 3.76TNNLDD56 pKa = 4.02EE57 pKa = 4.7EE58 pKa = 4.8WVEE61 pKa = 3.79EE62 pKa = 4.97PYY64 pKa = 10.95EE65 pKa = 4.22HH66 pKa = 7.29WCPGLPYY73 pKa = 10.27CDD75 pKa = 3.08TCGRR79 pKa = 11.84HH80 pKa = 5.77YY81 pKa = 10.81MGDD84 pKa = 3.43DD85 pKa = 3.0WW86 pKa = 6.69

Molecular weight: 10.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S9UPU9|A0A3S9UPU9_9CAUD Helix-turn-helix DNA binding protein OS=Gordonia phage Kenna OX=2499025 GN=43 PE=4 SV=1
MM1 pKa = 7.0NTIKK5 pKa = 10.78DD6 pKa = 3.5RR7 pKa = 11.84GIQASVVTAGILAVVTAVAYY27 pKa = 9.69SPPLLAVWAVWAGVTVWAIYY47 pKa = 7.23EE48 pKa = 4.03ARR50 pKa = 11.84RR51 pKa = 11.84KK52 pKa = 9.0HH53 pKa = 6.15ARR55 pKa = 11.84AA56 pKa = 3.49

Molecular weight: 6.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

98

0

98

16776

41

1875

171.2

18.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.998 ± 0.484

1.085 ± 0.182

6.575 ± 0.261

6.003 ± 0.292

2.724 ± 0.199

8.178 ± 0.428

2.253 ± 0.18

4.524 ± 0.181

3.588 ± 0.312

7.57 ± 0.248

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.337 ± 0.189

2.867 ± 0.166

5.526 ± 0.231

3.594 ± 0.166

7.409 ± 0.411

5.77 ± 0.279

6.605 ± 0.392

7.648 ± 0.324

2.289 ± 0.127

2.456 ± 0.197
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski