Alteromonas lipolytica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas

Average proteome isoelectric point is 5.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4316 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1E8FGX6|A0A1E8FGX6_9ALTE Lytic transglycosylase OS=Alteromonas lipolytica OX=1856405 GN=BFC17_14120 PE=4 SV=1
MM1 pKa = 7.71KK2 pKa = 10.48LKK4 pKa = 10.36QLASAVILATSGVAIAPLATAATYY28 pKa = 10.57DD29 pKa = 3.69LSLVPVQDD37 pKa = 3.59KK38 pKa = 11.11VFLNFAQSIDD48 pKa = 3.58NTGTMVVTAQGGYY61 pKa = 9.92NPPIDD66 pKa = 5.18LSLLDD71 pKa = 5.2FEE73 pKa = 5.94DD74 pKa = 3.42EE75 pKa = 4.15TFIARR80 pKa = 11.84FADD83 pKa = 3.91PEE85 pKa = 4.1AVEE88 pKa = 3.98QGIFSSADD96 pKa = 3.36YY97 pKa = 10.91QEE99 pKa = 4.71LYY101 pKa = 10.8AYY103 pKa = 9.4IVNARR108 pKa = 11.84GAGNTTFQPIASYY121 pKa = 10.76RR122 pKa = 11.84SYY124 pKa = 11.49KK125 pKa = 10.31SDD127 pKa = 3.02TVTADD132 pKa = 4.7LIPGFDD138 pKa = 4.15AFNDD142 pKa = 4.57AINDD146 pKa = 3.55YY147 pKa = 9.51WRR149 pKa = 11.84QNYY152 pKa = 8.13TSVYY156 pKa = 9.91DD157 pKa = 3.99SVGGDD162 pKa = 3.62YY163 pKa = 10.83FVGIANAPFFTVDD176 pKa = 3.26YY177 pKa = 10.0TNDD180 pKa = 3.67DD181 pKa = 3.71GDD183 pKa = 3.75EE184 pKa = 3.89FTYY187 pKa = 10.27IINNAQTQGFVEE199 pKa = 4.6VNGNATPLPSALADD213 pKa = 3.67APIPGYY219 pKa = 9.44SEE221 pKa = 3.91PFAINQSLQVVGWASVDD238 pKa = 3.5VTDD241 pKa = 6.18DD242 pKa = 3.61FQEE245 pKa = 5.84DD246 pKa = 3.07IDD248 pKa = 4.37ACLDD252 pKa = 3.52DD253 pKa = 4.44EE254 pKa = 4.94TRR256 pKa = 11.84GSQPFDD262 pKa = 3.11VCLYY266 pKa = 10.12NLSLNVTTGTYY277 pKa = 9.61RR278 pKa = 11.84RR279 pKa = 11.84AAIWQLDD286 pKa = 3.51AQGNVLSTTPYY297 pKa = 10.97GMAFEE302 pKa = 5.09PDD304 pKa = 2.92EE305 pKa = 4.63DD306 pKa = 4.53EE307 pKa = 4.56YY308 pKa = 10.73VTGYY312 pKa = 10.51VSSARR317 pKa = 11.84DD318 pKa = 3.37INDD321 pKa = 2.96NGIAVGYY328 pKa = 8.64AHH330 pKa = 6.85NGEE333 pKa = 4.37FVLYY337 pKa = 8.08TLPSAQPRR345 pKa = 11.84RR346 pKa = 11.84FTFPQEE352 pKa = 3.86VATTFVDD359 pKa = 4.69GVVTEE364 pKa = 4.01ILPRR368 pKa = 11.84EE369 pKa = 4.29DD370 pKa = 3.77SLSSYY375 pKa = 10.55AQGINNDD382 pKa = 3.26NWVMGTVLEE391 pKa = 4.54EE392 pKa = 4.13NNGFARR398 pKa = 11.84QHH400 pKa = 6.08LFVHH404 pKa = 6.15NLDD407 pKa = 3.63SGEE410 pKa = 4.59SIFPQGFFQTAGVRR424 pKa = 11.84PRR426 pKa = 11.84AINNNGIVVGEE437 pKa = 4.31GEE439 pKa = 4.43YY440 pKa = 10.9EE441 pKa = 4.11SDD443 pKa = 3.26VQYY446 pKa = 11.32DD447 pKa = 3.64RR448 pKa = 11.84QVRR451 pKa = 11.84AFMYY455 pKa = 9.92DD456 pKa = 2.92INVGDD461 pKa = 5.22FIDD464 pKa = 5.26LNTLLSCEE472 pKa = 3.74QRR474 pKa = 11.84EE475 pKa = 4.3QYY477 pKa = 10.91RR478 pKa = 11.84LVSAADD484 pKa = 3.3INDD487 pKa = 3.8DD488 pKa = 4.2NEE490 pKa = 4.71IIANALYY497 pKa = 10.7LDD499 pKa = 3.67TQRR502 pKa = 11.84YY503 pKa = 8.14IDD505 pKa = 4.03GEE507 pKa = 4.47EE508 pKa = 4.07VLTTAGDD515 pKa = 3.76TIDD518 pKa = 3.46ANRR521 pKa = 11.84IVAVKK526 pKa = 8.13LTPNGTGSVEE536 pKa = 3.93QCDD539 pKa = 3.32AAEE542 pKa = 4.01EE543 pKa = 4.0QNYY546 pKa = 7.9EE547 pKa = 4.12RR548 pKa = 11.84KK549 pKa = 10.04GATGTLYY556 pKa = 11.24GLLTLGLFAFLRR568 pKa = 11.84RR569 pKa = 11.84LSFRR573 pKa = 3.77

Molecular weight: 62.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1E8FG89|A0A1E8FG89_9ALTE Sigma-54-dependent Fis family transcriptional regulator OS=Alteromonas lipolytica OX=1856405 GN=BFC17_13510 PE=4 SV=1
MM1 pKa = 7.82ASTIVLPPATVSRR14 pKa = 11.84IIEE17 pKa = 4.3MAWEE21 pKa = 4.07DD22 pKa = 3.71RR23 pKa = 11.84TPFEE27 pKa = 4.98AIEE30 pKa = 4.07RR31 pKa = 11.84EE32 pKa = 4.2YY33 pKa = 11.41GLSQDD38 pKa = 3.34GVIRR42 pKa = 11.84LMRR45 pKa = 11.84RR46 pKa = 11.84EE47 pKa = 4.36LKK49 pKa = 10.4PSSFRR54 pKa = 11.84LWRR57 pKa = 11.84KK58 pKa = 7.14RR59 pKa = 11.84TQGRR63 pKa = 11.84TTKK66 pKa = 10.04HH67 pKa = 5.59LKK69 pKa = 10.05LRR71 pKa = 11.84SPDD74 pKa = 2.99ISRR77 pKa = 11.84GYY79 pKa = 10.85CPTQYY84 pKa = 10.69KK85 pKa = 9.43QRR87 pKa = 3.81

Molecular weight: 10.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4316

0

4316

1473345

38

2096

341.4

37.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.577 ± 0.034

1.005 ± 0.013

5.683 ± 0.032

6.029 ± 0.036

4.133 ± 0.025

6.957 ± 0.036

2.16 ± 0.018

5.95 ± 0.026

4.567 ± 0.032

10.321 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.512 ± 0.017

4.096 ± 0.026

4.154 ± 0.022

4.69 ± 0.032

4.679 ± 0.029

6.45 ± 0.026

5.586 ± 0.031

7.018 ± 0.028

1.277 ± 0.016

3.155 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski