Capnocytophaga cynodegmi

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Fla

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2439 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B7H5R3|A0A0B7H5R3_9FLAO N6_N4_Mtase domain-containing protein OS=Capnocytophaga cynodegmi OX=28189 GN=CCYN2B_150015 PE=4 SV=1
MM1 pKa = 7.59EE2 pKa = 4.73ATSLSEE8 pKa = 3.35ARR10 pKa = 11.84IYY12 pKa = 10.84VGTYY16 pKa = 9.92AKK18 pKa = 10.82YY19 pKa = 10.22NDD21 pKa = 3.72GSIEE25 pKa = 4.15GKK27 pKa = 9.58WFDD30 pKa = 5.19LSDD33 pKa = 4.14FSDD36 pKa = 3.24KK37 pKa = 11.61DD38 pKa = 3.51EE39 pKa = 5.1FYY41 pKa = 10.5EE42 pKa = 4.49ACKK45 pKa = 10.03EE46 pKa = 3.95LHH48 pKa = 6.84ADD50 pKa = 3.91EE51 pKa = 5.33EE52 pKa = 4.63DD53 pKa = 3.73PEE55 pKa = 5.1YY56 pKa = 10.77MFQDD60 pKa = 3.59WEE62 pKa = 4.41NIPDD66 pKa = 3.82EE67 pKa = 5.08LIGEE71 pKa = 4.38SWLSDD76 pKa = 3.27NFFDD80 pKa = 5.86IRR82 pKa = 11.84DD83 pKa = 3.79AMDD86 pKa = 5.13DD87 pKa = 3.57LSEE90 pKa = 4.74DD91 pKa = 3.56EE92 pKa = 4.96QEE94 pKa = 6.35AFMVWCNHH102 pKa = 5.23GSHH105 pKa = 7.29DD106 pKa = 5.51LSTEE110 pKa = 3.97DD111 pKa = 3.42AHH113 pKa = 8.57DD114 pKa = 5.14LISSFRR120 pKa = 11.84DD121 pKa = 3.52DD122 pKa = 3.97FQGKK126 pKa = 8.83YY127 pKa = 9.92NEE129 pKa = 4.43EE130 pKa = 3.26EE131 pKa = 4.14DD132 pKa = 3.62YY133 pKa = 10.92AYY135 pKa = 10.2EE136 pKa = 4.24VVEE139 pKa = 4.01QCYY142 pKa = 9.75EE143 pKa = 3.85LPEE146 pKa = 3.94FAKK149 pKa = 10.18TYY151 pKa = 10.62FDD153 pKa = 3.75YY154 pKa = 11.44EE155 pKa = 4.0KK156 pKa = 10.43FARR159 pKa = 11.84DD160 pKa = 4.15LFMGDD165 pKa = 3.04YY166 pKa = 9.29WFEE169 pKa = 4.77DD170 pKa = 3.65GFVFRR175 pKa = 11.84ASS177 pKa = 3.13

Molecular weight: 21.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B7H8R8|A0A0B7H8R8_9FLAO Prolyl tripeptidyl peptidase OS=Capnocytophaga cynodegmi OX=28189 GN=ptpA PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.13RR10 pKa = 11.84KK11 pKa = 9.48RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 9.49HH16 pKa = 3.94GFRR19 pKa = 11.84EE20 pKa = 4.19RR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 8.93VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.08GRR39 pKa = 11.84KK40 pKa = 8.3KK41 pKa = 9.83LTVSSEE47 pKa = 3.9PRR49 pKa = 11.84HH50 pKa = 5.77KK51 pKa = 10.61KK52 pKa = 9.84

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2439

0

2439

792223

26

5072

324.8

36.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.796 ± 0.056

0.777 ± 0.019

5.046 ± 0.035

7.154 ± 0.056

5.451 ± 0.049

6.039 ± 0.053

1.724 ± 0.024

8.085 ± 0.053

8.421 ± 0.061

9.089 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.175 ± 0.025

6.15 ± 0.049

3.301 ± 0.031

3.732 ± 0.032

3.646 ± 0.029

6.472 ± 0.041

5.501 ± 0.076

6.13 ± 0.045

1.059 ± 0.016

4.252 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski